At02165148_g1 Best Coverage

• Gene Symbol: SPHK1
• Gene Name: sphingosine kinase 1
• Gene Aliases: AT4G21540, F18E5.160, F18E5_160, sphingosine kinase 1
• Chromosome Location: Chr.4: 11459228 - 11462651 on Build TAIR10.1
• Species: Arabidopsis
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SPHK1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001036612.2	NP_001031689.2	1 - 2	402		72
	NM_001341496.1	NP_001320022.1	1 - 2	727		72
	NM_118274.8	NP_193885.6	1 - 2	727		72
GenBank mRNA	AY128394.1	-	1 - 2	395		72
	BT006621.1	-	1 - 2	346		72

More Information

Additional Information:

This assay is in the 5'UTR region of the NM_001036612.2 transcripts.

• Set Membership: Amplicon length between 71 and 85, Detect Genomic DNA, Recommended Assay, Arabidopsis thaliana, Probe spans exons

Panther Classification:

Molecular Function -

kinase

Gene Ontology Categories:

Process(es)

sphingolipid metabolic process
response to abscisic acid
seed germination
phosphorylation
sphingosine biosynthetic process
cellular response to abscisic acid stimulus

Function(s)

lipid kinase activity
NAD+ kinase activity
sphinganine kinase activity
D-erythro-sphingosine kinase activity