At02173356_g1 Best Coverage

• Gene Symbol: CCA1
• Gene Name: circadian clock associated 1
• Gene Aliases: AT2G46830, AtCCA1, F19D11.11, MYB-RELATED DNA BINDING PROTEIN, circadian clock associated 1
• Chromosome Location: Chr.2: 19245591 - 19248915 on Build TAIR10.1
• Species: Arabidopsis
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CCA1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001337221.1	NP_001318437.1	5 - 6	1013		80
	NM_180129.4	NP_850460.1	5 - 6	739		80
	NM_180130.2	NP_850461.1	2 - 3	267		80
GenBank mRNA	AY519511.1	-	4 - 5	409		80
	BT001096.1	-	1 - 2	163		80
	BT001105.1	-	1 - 2	163		80
	U28422.1	-	5 - 6	646		80

More Information

• Set Membership: Amplicon length between 71 and 85, Detect Genomic DNA, Recommended Assay, Arabidopsis thaliana, Probe spans exons

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

circadian rhythm
response to cold
response to organonitrogen compound
regulation of gene expression
negative regulation of circadian rhythm
regulation of protein complex assembly
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
long-day photoperiodism, flowering

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
protein domain specific binding
sequence-specific DNA binding