At02178140_g1 Best Coverage

• Gene Symbol: PIL5
• Gene Name: phytochrome interacting factor 3-like 5
• Gene Aliases: AT2G20180, PHY-INTERACTING FACTOR 1, PIF1, T2G17.2, T2G17_2, phytochrome interacting factor 3-like 5
• Chromosome Location: Chr.2: 8704024 - 8707009 on Build TAIR10.1
• Species: Arabidopsis
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: PIL5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001202630.2	NP_001189559.1	3 - 4	1037		68
	NM_001335663.1	NP_001318252.1	3 - 4	1032		68
	NM_001335664.1	NP_001323902.1	2 - 3	1164		68
	NM_001335665.1	NP_001323903.1	2 - 3	1127		68
	NM_001335666.1	NP_001323904.1	2 - 3	1268		68
	NM_001335667.1	NP_001323905.1	2 - 3	1231		68
	NM_001335668.1	NP_001323901.1	2 - 3	1164		68
	NM_179665.3	NP_849996.1	3 - 4	995		68
GenBank mRNA	AF488560.2	-	2 - 3	802		68
	BT029775.1	-	1 - 2	589		68

More Information

• Set Membership: Amplicon length less than or equal to 70, Detect Genomic DNA, Recommended Assay, Arabidopsis thaliana, Probe spans exons

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

regulation of transcription, DNA-templated
heme biosynthetic process
gibberellic acid mediated signaling pathway
negative gravitropism
regulation of seed germination
regulation of photomorphogenesis
negative regulation of photomorphogenesis
red light signaling pathway
negative regulation of seed germination
chlorophyll biosynthetic process

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
phytochrome binding
identical protein binding
protein dimerization activity