At02213948_m1 Best Coverage

• Gene Symbol: VIM5
• Gene Name: zinc finger (C3HC4-type RING finger) family protein
• Gene Aliases: AT1G57800, F12K22.15, F12K22_15, ORTH3, ORTHRUS 3, VARIANT IN METHYLATION 5
• Chromosome Location: Chr.1: 21408623 - 21412283 on Build TAIR10.1
• Species: Arabidopsis
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: VIM5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001333805.1	NP_001321213.1	1 - 2	512		66
	NM_104575.3	NP_176091.2	1 - 2	512		66

More Information

• Set Membership: Amplicon length less than or equal to 70, Recommended Assay, Arabidopsis thaliana, Probe spans exons

Panther Classification:

Molecular Function -

ubiquitin-protein ligase

Gene Ontology Categories:

Process(es)

maintenance of DNA methylation
DNA methylation on cytosine within a CG sequence
protein ubiquitination

Function(s)

ubiquitin-protein transferase activity
methyl-CpG binding
methyl-CpNpG binding
methyl-CpNpN binding
histone binding
ubiquitin protein ligase activity