At02213956_g1 Best Coverage

• Gene Symbol: VIM1
• Gene Name: Zinc finger (C3HC4-type RING finger) family protein
• Gene Aliases: AT1G57820, F12K22.14, F12K22_14, ORTH2, ORTHRUS 2, VARIANT IN METHYLATION 1
• Chromosome Location: Chr.1: 21413981 - 21418115 on Build TAIR10.1
• Species: Arabidopsis
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: VIM1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001333806.1	NP_001319260.1	1 - 2	683		86
	NM_104576.6	NP_176092.2	1 - 2	683		86
	NM_202316.2	NP_974045.1	1 - 2	505		86
GenBank mRNA	AY065438.1	-	1 - 2	496		86
	AY117235.1	-	1 - 2	470		86

More Information

• Set Membership: Amplicon length between 86 and 100, Detect Genomic DNA, Recommended Assay, Arabidopsis thaliana, Probe spans exons

Panther Classification:

Molecular Function -

ubiquitin-protein ligase

Gene Ontology Categories:

Process(es)

chromatin organization
maintenance of DNA methylation
DNA methylation on cytosine within a CG sequence
protein ubiquitination
pericentric heterochromatin assembly
DNA methylation on cytosine
cell division
positive regulation of methylation-dependent chromatin silencing

Function(s)

chromatin binding
ubiquitin-protein transferase activity
methyl-CpG binding
double-stranded methylated DNA binding
methyl-CpNpG binding
methyl-CpNpN binding
histone binding
ubiquitin protein ligase activity