At02257157_g1 Best Coverage

• Gene Symbol: SHM1
• Gene Name: serine transhydroxymethyltransferase 1
• Gene Aliases: AT4G37930, F20D10.50, F20D10_50, SERINE HYDROXYMETHYLTRANSFERASE 1, SERINE TRANSHYDROXYMETHYLASE, SERINE TRANSHYDROXYMETHYLTRANSFERASE, SHMT1, STM, serine transhydroxymethyltransferase 1
• Chromosome Location: Chr.4: 17831731 - 17835017 on Build TAIR10.1
• Species: Arabidopsis
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SHM1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_119954.4	NP_195506.1	5 - 6	698		66
GenBank mRNA	AF428388.1	-	5 - 6	477		66
	AJ271726.1	-	5 - 6	522		66
	AY057645.1	-	5 - 6	476		66
	AY070726.1	-	5 - 6	530		66
	BT006353.1	-	5 - 6	423		66

More Information

• Set Membership: Amplicon length less than or equal to 70, Detect Genomic DNA, Recommended Assay, Arabidopsis thaliana, Probe spans exons

Panther Classification:

Molecular Function -

methyltransferase

Gene Ontology Categories:

Process(es)

glycine metabolic process
L-serine metabolic process
L-serine catabolic process
one-carbon metabolic process
circadian rhythm
response to cold
response to light stimulus
plant-type hypersensitive response
photorespiration
glycine biosynthetic process from serine
glycine decarboxylation via glycine cleavage system
tetrahydrofolate interconversion
tetrahydrofolate metabolic process
folic acid metabolic process
response to cadmium ion
cellular response to tetrahydrofolate

Function(s)

mRNA binding
glycine hydroxymethyltransferase activity
protein binding
poly(U) RNA binding
zinc ion binding
amino acid binding
pyridoxal phosphate binding
cobalt ion binding
serine binding