Gg03364395_m1 Best Coverage

• Gene Symbol: SOX9
• Gene Name: SRY-box 9
• Gene Aliases: SOX-9
• Chromosome Location: Chr.18: 8786171 - 8789081 on Build GRCg6a
• Species: Chicken
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SOX9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_204281.1	NP_989612.1	2 - 3	802		104
GenBank mRNA	AB012236.1	-	2 - 3	802		104
	U12533.1	-	2 - 3	694		104

More Information

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Recommended Assay, Gallus gallus, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
cartilage condensation
ossification
branching involved in ureteric bud morphogenesis
neural crest cell migration
positive regulation of protein phosphorylation
morphogenesis of an epithelium
positive regulation of mesenchymal cell proliferation
chondrocyte differentiation
negative regulation of immune system process
heart valve development
aortic valve morphogenesis
heart valve formation
endocardial cushion morphogenesis
growth plate cartilage chondrocyte growth
nucleosome assembly
chromatin remodeling
transcription, DNA-templated
cytoskeleton organization
epidermal growth factor receptor signaling pathway
Notch signaling pathway
spermatogenesis
central nervous system development
heart development
male gonad development
regulation of cell cycle process
positive regulation of epithelial cell migration
neural crest cell fate specification
positive regulation of phosphatidylinositol 3-kinase signaling
male germ-line sex determination
cAMP-mediated signaling
extracellular matrix organization
negative regulation of bone mineralization
negative regulation of epithelial cell differentiation
positive regulation of epithelial cell differentiation
notochord development
otic vesicle formation
endocrine pancreas development
negative regulation of chondrocyte differentiation
positive regulation of chondrocyte differentiation
lacrimal gland development
positive regulation of collagen biosynthetic process
protein localization to nucleus
somatic stem cell population maintenance
intrahepatic bile duct development
neural crest cell delamination
protein kinase B signaling
negative regulation of myoblast differentiation
negative regulation of osteoblast differentiation
positive regulation of protein catabolic process
positive regulation of transcription from RNA polymerase II promoter
negative regulation of fatty acid oxidation
negative regulation of photoreceptor cell differentiation
embryonic digestive tract development
oligodendrocyte differentiation
homeostasis of number of cells within a tissue
positive regulation of epithelial cell proliferation
negative regulation of epithelial cell proliferation
Sertoli cell development
astrocyte fate commitment
limb bud formation
retinal rod cell differentiation
transdifferentiation
epithelial tube branching involved in lung morphogenesis
lung epithelial cell differentiation
bronchus cartilage development
trachea cartilage development
intestinal epithelial structure maintenance
regulation of cell proliferation involved in tissue homeostasis
regulation of cartilage development
regulation of branching involved in lung morphogenesis
lung smooth muscle development
ERK1 and ERK2 cascade
Harderian gland development
response to fatty acid
cellular response to mechanical stimulus
cellular response to retinoic acid
cellular response to interleukin-1
cellular response to epidermal growth factor stimulus
cellular response to heparin
cellular response to transforming growth factor beta stimulus
cellular response to BMP stimulus
renal vesicle induction
ureter urothelium development
ureter smooth muscle cell differentiation
ureter morphogenesis
metanephric nephron tubule formation
negative regulation of canonical Wnt signaling pathway
cochlea morphogenesis
positive regulation of branching involved in ureteric bud morphogenesis
positive regulation of neural crest formation
anterior head development
cell-cell adhesion
positive regulation of extracellular matrix assembly
positive regulation of cartilage condensation
positive regulation of chondrocyte proliferation
negative regulation of pri-miRNA transcription from RNA polymerase II promoter
negative regulation of bone development
positive regulation of male gonad development
positive regulation of cell proliferation involved in heart morphogenesis
positive regulation of mesenchymal stem cell differentiation
regulation of epithelial cell proliferation involved in lung morphogenesis
negative regulation of mesenchymal cell apoptotic process

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
chromatin binding
protein binding
beta-catenin binding
protein kinase A catalytic subunit binding
ubiquitin-like protein conjugating enzyme binding
pre-mRNA intronic binding