Hs00171121_m1

• Gene Symbol: CCR6
• Gene Name: C-C motif chemokine receptor 6
• Gene Aliases: BN-1, C-C CKR-6, CC-CKR-6, CCR-6, CD196, CKR-L3, CKRL3, CMKBR6, DCR2, DRY6, GPR29, GPRCY4, STRL22
• Chromosome Location: Chr.6: 167111807 - 167139141 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CCR6
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031409.3	NP_113597.2	1 - 2	468		63
GenBank mRNA	AK223494.1	-	1 - 2	124		63
	AK293015.1	-	1 - 2	142		63
	BC037960.1	-	1 - 2	106	5748098	63
	DA645096.1	-	1 - 2	468		63
	U68030.1	-	2 - 3	164		63
	U68031.1	-	1 - 2	451		63

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600014204.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06004106.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK293015.1,BC037960.1,NM_031409.3,U68030.1,U68031.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, G-protein coupled receptor, Immune Tolerance Network, Mammalian Gene Collection, Homo sapiens, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CCR6

Gene Ontology Categories:

Process(es)

dendritic cell chemotaxis
leukocyte migration involved in inflammatory response
movement of cell or subcellular component
chemotaxis
immune response
humoral immune response
cellular defense response
signal transduction
G-protein coupled receptor signaling pathway
positive regulation of cytosolic calcium ion concentration
positive regulation of epithelial cell migration
calcium-mediated signaling
isotype switching to IgA isotypes
cell chemotaxis
positive regulation of sperm motility involved in capacitation
chemokine-mediated signaling pathway
lymphocyte migration
T cell migration
thymocyte migration
DN2 thymocyte differentiation
DN3 thymocyte differentiation
regulation of T cell migration
positive regulation of dendritic cell chemotaxis

Function(s)

receptor activity
chemokine receptor activity
protein binding
C-C chemokine receptor activity
C-C chemokine binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR06014031.hg.1	TC06004106.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06014031.hg.1	ENST00000341935.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06014031.hg.1	ENST00000349984.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06014031.hg.1	ENST00000400926.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06014031.hg.1	NM_004367.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06014031.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06014027.hg.1	TC06004106.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06014027.hg.1	ENST00000341935.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06014027.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06014026.hg.1	TC06004106.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06014026.hg.1	ENST00000341935.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06014026.hg.1	ENST00000349984.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06014026.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06014029.hg.1	TC06004106.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06014029.hg.1	ENST00000341935.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06014029.hg.1	ENST00000349984.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06014029.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600199929.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199929.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199929.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600199929.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199929.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199929.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600199929.hg.1	TC0600014204.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0600199927.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199927.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600199927.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199927.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600199927.hg.1	TC0600014204.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0600199926.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199926.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199926.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600199926.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199926.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199926.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600199926.hg.1	TC0600014204.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_004367.5	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	TC0600014204.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	NM_004367.5	Refseq
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	ENST00000341935.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	ENST00000349984.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	ENST00000400926.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	NM_004367.5	Refseq
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	NM_031409.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600199930.hg.1	TC0600014204.hg.1	Clariom D TC