Hs00204814_m1 Best Coverage

• Gene Symbol: RBFOX2
• Gene Name: RNA binding protein, fox-1 homolog 2
• Gene Aliases: FOX2, Fox-2, HNRBP2, HRNBP2, RBM9, RTA, dJ106I20.3, fxh
• Chromosome Location: Chr.22: 35738736 - 36028892 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: RBFOX2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001031695.2	NP_001026865.1	4 - 5	814		94
	NM_001082576.1	NP_001076045.1	4 - 5	814		94
	NM_001082577.1	NP_001076046.1	4 - 5	814		94
	NM_001082578.1	NP_001076047.1	5 - 6	774		94
	NM_001082579.1	NP_001076048.1	5 - 6	771		94
	NM_014309.2	NP_055124.1	4 - 5	817		94
	XM_005261428.2	XP_005261485.1	5 - 6	1129		94
	XM_005261429.2	XP_005261486.1	5 - 6	1126		94
	XM_005261430.2	XP_005261487.1	5 - 6	1129		94
	XM_005261431.2	XP_005261488.1	5 - 6	1129		94
	XM_005261432.2	XP_005261489.1	5 - 6	1126		94
	XM_005261433.2	XP_005261490.1	5 - 6	1129		94
	XM_005261435.1	XP_005261492.1	4 - 5	818		94
	XM_005261437.1	XP_005261494.1	4 - 5	821		94
	XM_006724185.2	XP_006724248.1	5 - 6	1129		94
	XM_006724186.2	XP_006724249.1	5 - 6	1126		94
	XM_006724187.2	XP_006724250.1	5 - 6	1129		94
	XM_006724188.2	XP_006724251.1	5 - 6	1129		94
	XM_006724189.3	XP_006724252.1	5 - 6	822		94
	XM_006724190.1	XP_006724253.1	5 - 6	516		94
	XM_006724191.1	XP_006724254.1	4 - 5	821		94
	XM_006724192.2	XP_006724255.1	4 - 5	651		94
	XM_006724193.3	XP_006724256.1	5 - 6	1129		94
	XM_006724194.2	XP_006724257.1	4 - 5	593		94
	XM_017028686.1	XP_016884175.1	5 - 6	508		94
	XM_017028687.1	XP_016884176.1	5 - 6	689		94
	XM_017028688.1	XP_016884177.1	5 - 6	1126		94
	XM_017028689.1	XP_016884178.1	5 - 6	594		94
	XM_017028690.1	XP_016884179.1	4 - 5	571		94
	XM_017028691.1	XP_016884180.1	4 - 5	568		94
	XM_017028692.1	XP_016884181.1	5 - 6	863		94
	XM_017028693.1	XP_016884182.1	4 - 5	821		94
	XM_017028694.1	XP_016884183.1	4 - 5	818		94
	XM_017028695.1	XP_016884184.1	5 - 6	578		94
	XM_017028696.1	XP_016884185.1	4 - 5	821		94
	XM_017028697.1	XP_016884186.1	5 - 6	1598		94
	XM_017028698.1	XP_016884187.1	4 - 5	818		94
GenBank mRNA	AB649123.1	-	4 - 5	449		94
	AF229058.1	-	4 - 5	619		94
	AK055213.1	-	5 - 6	735		94
	AK291460.1	-	4 - 5	698		94
	AK314632.1	-	4 - 5	633		94
	AL009266.1	-	4 - 5	622		94
	AM419009.1	-	4 - 5	473		94
	AY072786.1	-	5 - 6	584		94
	AY960684.1	-	4 - 5	449		94
	BC025281.1	-	4 - 5	637	4555865	94
	CR456559.1	-	4 - 5	515		94
	DQ778625.1	-	5 - 6	662		94

More Information

Updated Mapping Information

This assay targets the same location as HTA transcript cluster(s) TC22000699.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Recommended Assay, Homo sapiens, Human Estrogen Panel, Inventoried, Human_Estrogen, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene RBFOX2

Panther Classification:

Molecular Function -

RNA metabolism protein, RNA processing factor, RNA splicing factor, nucleic acid metabolism protein

Gene Ontology Categories:

Process(es)

regulation of alternative mRNA splicing, via spliceosome
mRNA processing
nervous system development
RNA splicing
fibroblast growth factor receptor signaling pathway
regulation of definitive erythrocyte differentiation
RNA metabolic process
radial glia guided migration of Purkinje cell
intracellular estrogen receptor signaling pathway
regulation of cell proliferation
negative regulation of transcription, DNA-templated
dendrite morphogenesis
neuromuscular process controlling balance

Function(s)

nucleotide binding
transcription corepressor activity
RNA binding
mRNA binding
protein binding
transcription factor binding
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	ENST00000262829.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	ENST00000338644.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	ENST00000359369.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	ENST00000397303.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	ENST00000405409.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	ENST00000414461.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	ENST00000416721.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	ENST00000438146.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	ENST00000449924.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	NM_001031695.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	NM_001082576.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	NM_001082577.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	NM_001082578.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	NM_001082579.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	NM_014309.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22012271.hg.1	TC22000699.hg.1	HTA TC