Hs00212429_m1

• Gene Symbol: CNOT1
• Gene Name: CCR4-NOT transcription complex subunit 1
• Gene Aliases: AD-005, CDC39, NOT1, NOT1H
• Chromosome Location: Chr.16: 58519946 - 58629886 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CNOT1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001265612.1	NP_001252541.1	46 - 47	7099		143
	NM_016284.4	NP_057368.3	46 - 47	7114		143
	NR_049763.1		47 - 48	7282		143
GenBank mRNA	AB023224.2	-	33 - 34	5159		143
	AF110778.1	-	6 - 7	891		142
	AK056927.1	-	23 - 24	3444		143
	AK075125.1	-	16 - 17	2413		143
	AK092885.1	-	6 - 7	1658		143
	AK301092.1	-	6 - 7	878		143
	AK302495.1	-	23 - 24	3484		143
	AL117492.1	-	18 - 19	2953		143
	AL833549.1	-	46 - 47	7073		143
	BC000779.2	-	8 - 9	1272		143
	BC024317.1	-	29 - 30	4513		143
	BC027969.2	-	5 - 6	728		143
	BX537840.1	-	47 - 48	7228		143
	EF553522.1	-	46 - 47	7048		143

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1600010490.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Homo sapiens, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CNOT1

Panther Classification:

Molecular Function -

mRNA polyadenylation factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
nuclear-transcribed mRNA poly(A) tail shortening
transcription, DNA-templated
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
multicellular organism development
positive regulation of cytoplasmic mRNA processing body assembly
negative regulation of translation
negative regulation of intracellular estrogen receptor signaling pathway
gene silencing by miRNA
negative regulation of retinoic acid receptor signaling pathway
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
positive regulation of mRNA catabolic process
RNA phosphodiester bond hydrolysis, exonucleolytic
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
regulation of stem cell population maintenance

Function(s)

poly(A)-specific ribonuclease activity
protein binding
protein domain specific binding
estrogen receptor binding
protein complex scaffold
retinoic acid receptor binding
poly(A) RNA binding
armadillo repeat domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000245138.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000317147.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000563130.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000567188.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000569240.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000569924.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	NM_001265612.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	NM_016284.4	Refseq
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	NR_049763.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000245138.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000317147.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000563130.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000567188.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000569240.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	ENST00000569924.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	NM_001265612.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	NM_016284.4	Refseq
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	NR_049763.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600180625.hg.1	TC1600010490.hg.1	Clariom D TC