Hs00230919_m1

• Gene Symbol: CDX2
• Gene Name: caudal type homeobox 2
• Gene Aliases: CDX-3, CDX2/AS, CDX3
• Chromosome Location: Chr.13: 27960918 - 27969368 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CDX2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001265.4	NP_001256.3	1 - 2	901		98
	XM_011534877.2	XP_011533179.1	1 - 2	870		98
GenBank mRNA	BC014461.1	-	1 - 2	713	4867859	98
	KJ081251.1	-	1 - 2	533		98
	U51096.1	-	1 - 2	603		98
	Y13709.1	-	1 - 2	899		98

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1300008449.hg.1
This assay targets the same location as HTA transcript cluster(s) TC13000513.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Homo sapiens, Human Stem Cell Pluripotency, Inventoried, Human_Stem_Cell, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CDX2

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
blood vessel development
trophectodermal cell differentiation
transcription from RNA polymerase II promoter
positive regulation of cell proliferation
endosome to lysosome transport
organ morphogenesis
anterior/posterior axis specification
regulation of somitogenesis
cell differentiation
somatic stem cell population maintenance
establishment or maintenance of epithelial cell apical/basal polarity
positive regulation of cell differentiation
positive regulation of transcription, DNA-templated
intestinal epithelial cell differentiation
labyrinthine layer development

Function(s)

RNA polymerase II distal enhancer sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
transcription factor activity, sequence-specific DNA binding
transcription corepressor activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000548877.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000548877.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000548877.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	ENST00000548877.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13005790.hg.1	ENST00000381020.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13005790.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13005790.hg.1	TC13000513.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR13005789.hg.1	ENST00000381020.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13005789.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13005789.hg.1	TC13000513.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR13005791.hg.1	ENST00000381020.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13005791.hg.1	NM_001265.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13005791.hg.1	TC13000513.hg.1	HTA TC
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000548877.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000548877.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000548877.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	ENST00000548877.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	TC1300008449.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300156951.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	PSR1300156951.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300156951.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	PSR1300156951.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300156951.hg.1	TC1300008449.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300156947.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	PSR1300156947.hg.1	ENST00000548877.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300156947.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300156947.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	PSR1300156947.hg.1	ENST00000548877.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300156947.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300156947.hg.1	TC1300008449.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300156949.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	PSR1300156949.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300156949.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	PSR1300156949.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300156949.hg.1	TC1300008449.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300156950.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	PSR1300156950.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300156950.hg.1	ENST00000381020.7	Ensembl
Affymetrix Human Clariom D Assay	PSR1300156950.hg.1	NM_001265.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300156950.hg.1	TC1300008449.hg.1	Clariom D TC