Hs00266237_m1 Best Coverage

• Gene Symbol: COL4A1
• Gene Name: collagen type IV alpha 1 chain
• Gene Aliases: BSVD, RATOR
• Chromosome Location: Chr.13: 110148958 - 110307157 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: COL4A1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001303110.1	NP_001290039.1	20 - 21	1255		75
	NM_001845.5	NP_001836.3	20 - 21	1255		75
	XM_011521048.2	XP_011519350.1	20 - 21	9187		75
GenBank mRNA	AB209646.1	-	20 - 21	1240		75
	BC142626.1	-	20 - 21	1229		75
	BC151220.1	-	20 - 21	1239	40148649	75
	X05561.1	-	20 - 21	1247		75
	Y00706.1	-	18 - 19	990		75

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1300009781.hg.1
This assay targets the same location as HTA transcript cluster(s) TC13000872.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Homo sapiens, Human Angiogenesis, Inventoried, Human_Angiogenesis, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene COL4A1

Panther Classification:

Molecular Function -

extracellular matrix structural protein

Gene Ontology Categories:

Process(es)

patterning of blood vessels
brain development
neuromuscular junction development
extracellular matrix organization
collagen catabolic process
epithelial cell differentiation
blood vessel morphogenesis
retinal blood vessel morphogenesis
renal tubule morphogenesis
cellular response to amino acid stimulus
basement membrane organization

Function(s)

extracellular matrix structural constituent
protein binding
extracellular matrix constituent conferring elasticity
platelet-derived growth factor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR13009746.hg.1	ENST00000375815.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009746.hg.1	ENST00000375820.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009746.hg.1	ENST00000397198.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009746.hg.1	ENST00000543140.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009746.hg.1	NM_001845.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13009746.hg.1	TC13000872.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1300165200.hg.1	ENST00000375820.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165200.hg.1	ENST00000543140.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165200.hg.1	NM_001303110.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300165200.hg.1	NM_001845.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300165200.hg.1	ENST00000375820.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165200.hg.1	ENST00000543140.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165200.hg.1	NM_001303110.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300165200.hg.1	NM_001845.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300165200.hg.1	TC1300009781.hg.1	Clariom D TC