Hs00268388_s1

• Gene Symbol: SOX4
• Gene Name: SRY-box 4
• Gene Aliases: EVI16
• Chromosome Location: Chr.6: 21593741 - 21598619 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SOX4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_003107.2	NP_003098.1	1	797		143
GenBank mRNA	X70683.1	-	1	353		143

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600007158.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06000135.hg.1

Additional Information:

This assay is in the 5'UTR region of the NM_003107.2,X70683.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Detect Genomic DNA, Homo sapiens, 1700, Inventoried, Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SOX4

Panther Classification:

Molecular Function -

HMG box transcription factor

Gene Ontology Categories:

Process(es)

skeletal system development
neural tube formation
pro-B cell differentiation
mitral valve morphogenesis
cardiac ventricle formation
cardiac right ventricle morphogenesis
atrial septum primum morphogenesis
noradrenergic neuron differentiation
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
heart development
positive regulation of cell proliferation
negative regulation of cell proliferation
glial cell proliferation
spinal cord development
spinal cord motor neuron differentiation
glial cell development
positive regulation of Wnt signaling pathway
T cell differentiation
endocrine pancreas development
negative regulation of protein ubiquitination
regulation of protein stability
positive regulation of insulin secretion
somatic stem cell population maintenance
ascending aorta morphogenesis
glucose homeostasis
DNA damage response, detection of DNA damage
positive regulation of apoptotic process
positive regulation of translation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
negative regulation of protein export from nucleus
sympathetic nervous system development
protein stabilization
canonical Wnt signaling pathway
limb bud formation
ventricular septum morphogenesis
negative regulation of cell death
neuroepithelial cell differentiation
kidney morphogenesis
cellular response to glucose stimulus
positive regulation of canonical Wnt signaling pathway
positive regulation of N-terminal peptidyl-lysine acetylation

Function(s)

transcription regulatory region sequence-specific DNA binding
core promoter sequence-specific DNA binding
nucleic acid binding transcription factor activity
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription coactivator activity
transcription factor activity, sequence-specific DNA binding
protein binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	ENST00000244745.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	NM_003107.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	NM_003107.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	NM_003107.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	NM_003107.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	NM_003107.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	NM_003107.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	NM_003107.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	NM_003107.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	NM_003107.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600007158.hg.1	NM_003107.2	Refseq

Array Name	Probe IDs	Targets	Target Type
ABI Human Genome Survey Microarray Version 2.0	201275	-	-