Hs00288947_s1

• Gene Symbol: NPTN-IT1
• Gene Name: NPTN intronic transcript 1
• Gene Aliases: lncRNA-LET
• Chromosome Location: Chr.15: 73566938 - 73569543 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: NPTN-IT1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_103844.1		1	597		71
GenBank mRNA	AK055007.1	-	1	348		71

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	H19173.1	-	1			Chr. 15 - 73568490 - 73568997 [-] on Build GRCh38	70
GenBankmRNA	DA060840.1	-	1	348		Chr. 15 - 73568749 - 73569294 [-] on Build GRCh38	71
GenBankmRNA	Z42645.1	-	1	51		Chr. 17 - 7012605 - 7014182 [+] on Build GRCh38	71

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	RNASEK-C17orf49 readthrough	RNASEK-C17orf49			Sense	Chr. 17 - 7012417 - 7017524 on NCBI Build GRCh38
Downstream	CD276 molecule	CD276	4Ig-B7-H3, B7-H3, B7H3, B7RP-2	115.0kb	Anti-sense	Chr. 15 - 73683966 - 73714518 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1500009985.hg.1

• Set Membership: Amplicon length less than or equal to 70, Amplicon length between 71 and 85, 3' Most, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1500009985.hg.1	ENST00000628401.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1500009985.hg.1	NR_103844.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1500009985.hg.1	NR_103844.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1500009985.hg.1	NR_103844.1	Refseq
Affymetrix Human Clariom D Assay	PSR1500174306.hg.1	NR_103844.1	Refseq
Affymetrix Human Clariom D Assay	PSR1500174306.hg.1	TC1500009985.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1500174306.hg.1	NR_103844.1	Refseq
Affymetrix Human Clariom D Assay	PSR1500174307.hg.1	ENST00000628401.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1500174307.hg.1	NR_103844.1	Refseq
Affymetrix Human Clariom D Assay	PSR1500174307.hg.1	TC1500009985.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1500174307.hg.1	ENST00000628401.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1500174307.hg.1	NR_103844.1	Refseq
Affymetrix Human Clariom D Assay	TC1500009985.hg.1	ENST00000628401.1	Ensembl
Affymetrix Human Clariom D Assay	TC1500009985.hg.1	NR_103844.1	Refseq
Affymetrix Human Clariom D Assay	TC1500009985.hg.1	NR_103844.1	Refseq
Affymetrix Human Clariom D Assay	TC1500009985.hg.1	NR_103844.1	Refseq
Affymetrix Human Clariom D Assay	PSR1500174308.hg.1	NR_103844.1	Refseq
Affymetrix Human Clariom D Assay	PSR1500174308.hg.1	TC1500009985.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1500174308.hg.1	NR_103844.1	Refseq