Hs00368409_m1 Best Coverage

• Gene Symbol: VIPAS39
• Gene Name: VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
• Gene Aliases: C14orf133, SPE-39, SPE39, VIPAR, VPS16B, hSPE-39
• Chromosome Location: Chr.14: 77426675 - 77457640 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: VIPAS39
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001193314.1	NP_001180243.1	11 - 12	1303		134
	NM_001193315.1	NP_001180244.1	11 - 12	903		134
	NM_001193316.1	NP_001180245.1	10 - 11	756		134
	NM_001193317.1	NP_001180246.1	11 - 12	1080		134
	NM_022067.3	NP_071350.2	12 - 13	1174		134
	XM_011537066.1	XP_011535368.1	10 - 11	801		134
	XM_017021579.1	XP_016877068.1	10 - 11	935		134
	XM_017021580.1	XP_016877069.1	11 - 12	894		134
	XM_017021581.1	XP_016877070.1	11 - 12	1028		134
GenBank mRNA	AK022769.1	-	11 - 12	851		134
	AK022925.1	-	11 - 12	829		134
	AK098254.1	-	11 - 12	1264		134
	AK222706.1	-	11 - 12	849		134
	AK298354.1	-	10 - 11	702		134
	BC015054.1	-	12 - 13	1095	3920459	134
	CR457294.1	-	10 - 11	757		134

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1400009784.hg.1
This assay targets the same location as HTA transcript cluster(s) TC14001346.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Recommended Assay, Homo sapiens, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene VIPAS39

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
intracellular protein transport
spermatogenesis
endosome to lysosome transport
cell differentiation
autophagosome maturation

Function(s)

protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	ENST00000327028.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	ENST00000343765.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	ENST00000448935.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	ENST00000553888.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	ENST00000556412.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	ENST00000557658.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	NM_001193314.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	NM_001193315.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	NM_001193316.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	NM_001193317.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	NM_022067.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR14015283.hg.1	TC14001346.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000327028.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000343765.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000448935.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000553576.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000553691.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000553888.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000556412.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000557658.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	NM_001193314.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	NM_001193315.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	NM_001193316.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	NM_001193317.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	NM_022067.3	Refseq
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000327028.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000343765.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000448935.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000553576.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000553691.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000553888.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000556412.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	ENST00000557658.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	NM_001193314.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	NM_001193315.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	NM_001193316.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	NM_001193317.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	NM_022067.3	Refseq
Affymetrix Human Clariom D Assay	PSR1400172204.hg.1	TC1400009784.hg.1	Clariom D TC