Hs00383397_m1

• Gene Symbol: SMG5
• Gene Name: SMG5, nonsense mediated mRNA decay factor
• Gene Aliases: EST1B, LPTS-RP1, LPTSRP1, SMG-5
• Chromosome Location: Chr.1: 156249224 - 156291498 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SMG5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001323614.1	NP_001310543.1	14 - 15	2321		60
	NM_001323615.1	NP_001310544.1	13 - 14	2183		60
	NM_001323616.1	NP_001310545.1	15 - 16	2453		60
	NM_001323617.1	NP_001310546.1	15 - 16	2288		60
	NM_015327.2	NP_056142.2	14 - 15	2260		60
	XM_017000842.1	XP_016856331.1	10 - 11	2206		60
	XM_017000843.1	XP_016856332.1	13 - 14	2188		60
GenBank mRNA	AB029012.2	-	14 - 15	2262		60
	AB085691.1	-	14 - 15	2188		60
	AK027486.1	-	1 - 2	48		60
	AL137738.1	-	3 - 4	362		60
	AY168922.1	-	14 - 15	2114		60
	AY336728.1	-	14 - 15	2111		60
	BC007453.2	-	3 - 4	707		60
	BC038296.1	-	14 - 15	2261	4824487	60

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0100015991.hg.1
This assay targets the same location as HTA transcript cluster(s) TC01003334.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK027486.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Homo sapiens, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SMG5

Gene Ontology Categories:

Process(es)

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
mRNA export from nucleus
regulation of telomere maintenance
regulation of telomere maintenance via telomerase
regulation of dephosphorylation

Function(s)

protein binding
ubiquitin protein ligase binding
telomeric DNA binding
histone deacetylase binding
protein phosphatase 2A binding
DNA polymerase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR01051955.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01051955.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01051955.hg.1	TC01003334.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR01051956.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01051956.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01051956.hg.1	TC01003334.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100221106.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0100221106.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100221106.hg.1	TC0100015991.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0100221106.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0100221106.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100221105.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0100221105.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100221105.hg.1	TC0100015991.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0100221105.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0100221105.hg.1	NM_015327.2	Refseq