Hs00538221_m1

• Gene Symbol: SEPSECS
• Gene Name: Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
• Gene Aliases: LP, PCH2D, SLA, SLA/LP
• Chromosome Location: Chr.4: 25120005 - 25160582 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SEPSECS
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_016955.3	NP_058651.3	1 - 2	332		63
	XM_017008278.1	XP_016863767.1	1 - 2	283		63
GenBank mRNA	AJ238617.1	-	1 - 2	113		63
	AK292476.1	-	1 - 2	332		63
	BC126213.1	-	1 - 2	39	8991929	63
	BX648976.1	-	1 - 2	193		63

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0400010260.hg.1
This assay targets the same location as HTA transcript cluster(s) TC04001090.hg.1

Additional Information:

This assay is in the 5'UTR region of the AJ238617.1,BC126213.1,XM_017008278.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Homo sapiens, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SEPSECS

Gene Ontology Categories:

Process(es)

selenocysteine incorporation
selenocysteine metabolic process
selenocysteinyl-tRNA(Sec) biosynthetic process

Function(s)

tRNA binding
protein binding
phosphoseryl-selenocysteinyl-tRNA selenium transferase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR04015035.hg.1	TC04001090.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR04015035.hg.1	ENST00000302922.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04015035.hg.1	ENST00000382103.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04015035.hg.1	NM_016955.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR04015032.hg.1	TC04001090.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR04015032.hg.1	ENST00000302922.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04015032.hg.1	ENST00000382103.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04015032.hg.1	NM_016955.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR04015037.hg.1	TC04001090.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR04015037.hg.1	ENST00000302922.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04015037.hg.1	NM_016955.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR04015033.hg.1	TC04001090.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR04015033.hg.1	ENST00000302922.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04015033.hg.1	ENST00000382103.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04015033.hg.1	NM_016955.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR04015029.hg.1	TC04001090.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR04015029.hg.1	ENST00000382103.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04015029.hg.1	NM_016955.3	Refseq
Affymetrix Human Clariom D Assay	PSR0400170288.hg.1	NM_016955.3	Refseq
Affymetrix Human Clariom D Assay	PSR0400170288.hg.1	NM_016955.3	Refseq
Affymetrix Human Clariom D Assay	PSR0400170288.hg.1	TC0400010260.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0400170279.hg.1	ENST00000358971.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0400170279.hg.1	ENST00000382103.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0400170279.hg.1	ENST00000513285.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400170279.hg.1	NM_016955.3	Refseq
Affymetrix Human Clariom D Assay	PSR0400170279.hg.1	ENST00000358971.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0400170279.hg.1	ENST00000382103.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0400170279.hg.1	ENST00000513285.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400170279.hg.1	NM_016955.3	Refseq
Affymetrix Human Clariom D Assay	PSR0400170279.hg.1	TC0400010260.hg.1	Clariom D TC

Array Name	Probe IDs	Targets	Target Type
ABI Human Genome Survey Microarray Version 2.0	122155	-	-
ABI Human Genome Survey Microarray Version 2.0	202567	-	-