Hs00739599_m1

Gene Symbol:

U2AF1 U2AF1L5

Gene Name:

U2 small nuclear RNA auxiliary factor 1

U2 small nuclear RNA auxiliary factor 1 like 5

Gene Aliases:

FP793, RN, RNU2AF1, U2AF35, U2AFBP

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Chromosome Location:

Chr.21: 43092956 - 43108291 on Build GRCh38

Chromosome Location:

Chr.21: 6484623 - 6499284 on Build GRCh38

Species:

Human

Species Specific ID (Flybase ID):

-

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Assay Details

Gene Symbol: U2AF1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_006758.2	NP_006749.1	2 - 3	215		151
	XM_011529743.2	XP_011528045.1	2 - 3	928		151
GenBank mRNA	AB451244.1	-	2 - 3	131		151
	AK307560.1	-	2 - 3	164		151
	BC001177.1	-	2 - 3	159	3534272	151
	BC001923.1	-	2 - 3	159	2823296	151
	CB110007.1	-	2 - 3	215		151
	M96982.1	-	2 - 3	169		151

Gene Symbol: U2AF1L5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001320646.1	NP_001307575.1	2 - 3	243		151
	XM_017028219.1	XP_016883708.1	2 - 3	243		151
GenBank mRNA	AL522322.3	-	2 - 3	160		151

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC2100007492.hg.1
This assay targets the same location as HTA transcript cluster(s) TC21000501.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Homo sapiens, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene U2AF1
Click here to find siRNAs for Gene U2AF1L5

Gene Ontology Categories:

Process(es)

mRNA splicing, via spliceosome
termination of RNA polymerase II transcription
mRNA processing
RNA export from nucleus
mRNA export from nucleus
RNA splicing
mRNA 3'-end processing
regulation of autophagy of mitochondrion
positive regulation of protein targeting to mitochondrion

Function(s)

nucleotide binding
RNA binding
protein binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR21006075.hg.1	TC21000501.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR21006075.hg.1	ENST00000291552.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR21006075.hg.1	ENST00000398137.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR21006075.hg.1	ENST00000459639.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR21006075.hg.1	NM_001025204.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR21006075.hg.1	NM_006758.2	Refseq
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	ENST00000610664.4	Ensembl
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	ENST00000620065.4	Ensembl
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	ENST00000623375.3	Ensembl
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	ENST00000624739.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	NM_001025204.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	NM_006758.2	Refseq
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	TC2100007492.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	ENST00000623375.3	Ensembl
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	ENST00000610664.4	Ensembl
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	ENST00000620065.4	Ensembl
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	ENST00000624739.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	NM_001025204.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100151044.hg.1	NM_006758.2	Refseq