Hs00904548_m1

• Gene Symbol: ALG2
• Gene Name: ALG2, alpha-1,3/1,6-mannosyltransferase
• Gene Aliases: CDGIi, CMS14, CMSTA3, NET38, hALPG2
• Chromosome Location: Chr.9: 99216425 - 99221964 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: ALG2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_024532.1		2 - 3	578		150
GenBank mRNA	AK074988.1	-	2 - 3	556		150
	AY358697.1	-	1 - 2	163		150

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AI768004.1	-	2 - 3	221		Chr. 9 - 99218594 - 99221607 [-] on Build GRCh38	150
GenBankmRNA	AW051481.1	-	2 - 3	221		Chr. 9 - 99218621 - 99221607 [-] on Build GRCh38	150
GenBankmRNA	BP342204.1	-	2 - 3	526		Chr. 9 - 99218778 - 99221912 [-] on Build GRCh38	150
GenBankmRNA	CF132606.1	-	2 - 3	345		Chr. 9 - 99218712 - 99221731 [-] on Build GRCh38	150
GenBankmRNA	CF131378.1	-	2 - 3	377		Chr. 9 - 99218633 - 99221763 [-] on Build GRCh38	150
GenBankmRNA	DA430466.1	-	2 - 3	527		Chr. 9 - 99218796 - 99221912 [-] on Build GRCh38	150
GenBankmRNA	DA736744.1	-	2 - 3	556		Chr. 9 - 99218649 - 99221942 [-] on Build GRCh38	150
GenBankmRNA	DR006890.1	-	2 - 3	435		Chr. 9 - 99218507 - 99221816 [-] on Build GRCh38	150
GenBankmRNA	AI863884.1	-	2 - 3	221		Chr. 9 - 99218654 - 99221607 [-] on Build GRCh38	150
GenBankmRNA	BQ641538.1	-		468		Chr. - - [-] on Build	150
GenBankmRNA	BU594798.1	-	2 - 3	559		Chr. 9 - 99218625 - 99221944 [-] on Build GRCh38	150
GenBankmRNA	BG773528.1	-	2 - 3	373		Chr. 9 - 99218494 - 99221523 [-] on Build GRCh38	150
GenBankmRNA	HY019575.1	-	2 - 3	288		Chr. 9 - 99218635 - 99221548 [-] on Build GRCh38	150
GenBankmRNA	DB187551.1	-	2 - 3	531		Chr. 9 - 99218789 - 99221912 [-] on Build GRCh38	150
GenBankmRNA	AA769683.1	-	2 - 3	220		Chr. 9 - 99218552 - 99221606 [-] on Build GRCh38	150
GenBankmRNA	AI278375.1	-	2 - 3	221		Chr. 9 - 99218609 - 99221607 [-] on Build GRCh38	150
GenBankmRNA	DA714128.1	-	2 - 3	536		Chr. 9 - 99218795 - 99221914 [-] on Build GRCh38	150
GenBankmRNA	AI183323.1	-	2 - 3	221		Chr. 9 - 99218659 - 99221607 [-] on Build GRCh38	150
GenBankmRNA	CB046477.1	-	1 - 2			Chr. 9 - 99218381 - 99221140 [+] on Build GRCh38	150

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	transforming growth factor beta receptor 1	TGFBR1	AAT5, ACVRLK4, ALK-5, ALK5, ESS1, LDS1, LDS1A, LDS2A, MSSE, SKR4, TGFR-1, tbetaR-I	-64.4kb	Anti-sense	Chr. 9 - 99104038 - 99154192 on NCBI Build GRCh38
Downstream	Sec61 translocon beta subunit	SEC61B		1.2kb	Anti-sense	Chr. 9 - 99222288 - 99230619 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0900010995.hg.1
This assay targets the same location as HTA transcript cluster(s) TC09001411.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK074988.1,AY358697.1 transcripts.

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Homo sapiens, Probe spans exons

Panther Classification:

Molecular Function -

transferase

Gene Ontology Categories:

Process(es)

dolichol-linked oligosaccharide biosynthetic process
protein glycosylation in endoplasmic reticulum
response to calcium ion
mannosylation

Function(s)

alpha-1,3-mannosyltransferase activity
GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity
protein binding
protein heterodimerization activity
protein N-terminus binding
calcium-dependent protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR09017598.hg.1	TC09001411.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR09017598.hg.1	NM_033087.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR09017598.hg.1	NR_024532.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000319033.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000319033.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000319033.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000476832.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000476832.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000476832.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	ENST00000476832.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NM_033087.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NM_033087.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NM_033087.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NM_033087.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NM_033087.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR09017602.hg.1	TC09001411.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR09017602.hg.1	ENST00000319033.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09017602.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	ENST00000319033.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	ENST00000476832.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	NM_033087.3	Refseq
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	ENST00000319033.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	ENST00000476832.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	NM_033087.3	Refseq
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900174939.hg.1	TC0900010995.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000319033.7	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000319033.7	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000319033.7	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000476832.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000476832.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000476832.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	ENST00000476832.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NM_033087.3	Refseq
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NM_033087.3	Refseq
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NM_033087.3	Refseq
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NM_033087.3	Refseq
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NM_033087.3	Refseq
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010995.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900174936.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0900174936.hg.1	NM_033087.3	Refseq
Affymetrix Human Clariom D Assay	PSR0900174936.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900174936.hg.1	ENST00000238477.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0900174936.hg.1	NM_033087.3	Refseq
Affymetrix Human Clariom D Assay	PSR0900174936.hg.1	NR_024532.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900174936.hg.1	TC0900010995.hg.1	Clariom D TC