Hs00927057_m1

• Gene Symbol: PRPF40A
• Gene Name: pre-mRNA processing factor 40 homolog A
• Gene Aliases: FBP-11, FBP11, FLAF1, FNBP3, HIP-10, HIP10, HYPA, NY-REN-6, Prp40
• Chromosome Location: Chr.2: 152651593 - 152718007 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: PRPF40A
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_017892.3	NP_060362.3	9 - 10	677		144
	XM_005246676.4	XP_005246733.3	9 - 10	1197		144
	XM_005246677.4	XP_005246734.2	9 - 10	673		144
	XM_011511446.2	XP_011509748.1	8 - 9	1143		90
	XM_011511447.2	XP_011509749.1	9 - 10	1197		144
	XM_011511448.2	XP_011509750.1	8 - 9	619		90
	XM_011511449.2	XP_011509751.1	11 - 12	1027		144
	XM_017004453.1	XP_016859942.1	9 - 10	1197		144
	XM_017004454.1	XP_016859943.1	8 - 9	1143		90
	XM_017004455.1	XP_016859944.1	8 - 9	619		90
	XM_017004456.1	XP_016859945.1	10 - 11	863		144
	XM_017004457.1	XP_016859946.1	11 - 12	1026		144
	XM_017004458.1	XP_016859947.1	9 - 10	773		90
	XM_017004459.1	XP_016859948.1	9 - 10	882		90
	XM_017004460.1	XP_016859949.1	9 - 10	810		90
	XM_017004461.1	XP_016859950.1	9 - 10	882		90
GenBank mRNA	AF049523.1	-	9 - 10	662		144
	AF049528.1	-	9 - 10	749		144
	AK024810.1	-	10 - 11	996		144
	AK298547.1	-	6 - 7	514		144
	BC000273.1	-	9 - 10	640		144
	BC011788.2	-	9 - 10	661		144
	BC029414.1	-	9 - 10	677		144
	U70667.1	-	8 - 9	661		90

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0200014631.hg.1
This assay targets the same location as HTA transcript cluster(s) TC02002434.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene PRPF40A

Gene Ontology Categories:

Process(es)

mRNA splicing, via spliceosome
cytoskeleton organization
cell cycle
regulation of cell shape
cell migration
regulation of cytokinesis
cell division

Function(s)

RNA binding
protein binding
poly(A) RNA binding
proline-rich region binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR02038429.hg.1	TC02002434.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR02038429.hg.1	ENST00000356402.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02038429.hg.1	ENST00000359961.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02038429.hg.1	ENST00000410080.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02038429.hg.1	ENST00000440252.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02038429.hg.1	NM_017892.4	Refseq
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	ENST00000354363.10	Ensembl
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	ENST00000410080.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	ENST00000493468.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	ENST00000545856.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	NM_017892.4	Refseq
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	ENST00000354363.10	Ensembl
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	ENST00000410080.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	ENST00000493468.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	ENST00000545856.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	NM_017892.4	Refseq
Affymetrix Human Clariom D Assay	PSR0200206494.hg.1	TC0200014631.hg.1	Clariom D TC