Hs00929484_m1

• Gene Symbol: APOBEC1
• Gene Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
• Gene Aliases: APOBEC-1, BEDP, CDAR1, HEPR
• Chromosome Location: Chr.12: 7649400 - 7670599 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: APOBEC1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001304566.1	NP_001291495.1	1 - 2	41		74
	NM_001644.4	NP_001635.2	1 - 2	48		74
GenBank mRNA	BC096158.1	-	1 - 2	38		74
	BC101972.1	-	1 - 2	35		74
	BC101973.1	-	1 - 2	38		74
	L26234.1	-	1 - 2	41		74

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1200009789.hg.1
This assay targets the same location as HTA transcript cluster(s) TC12001163.hg.1

Additional Information:

This assay is in the 5'UTR region of the BC096158.1,BC101972.1,BC101973.1,L26234.1,NM_001304566.1,NM_001644.4 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Homo sapiens, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene APOBEC1

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

RNA processing
mRNA processing
lipid metabolic process
response to osmotic stress
cytidine deamination
response to zinc ion
response to gamma radiation
cytidine to uridine editing
mRNA modification
cellular response to insulin stimulus
regulation of cell proliferation
lipoprotein biosynthetic process
response to drug
lipoprotein transport
positive regulation of catalytic activity
response to ethanol
mRNA stabilization
response to calcium ion
defense response to virus
DNA cytosine deamination
DNA demethylation
negative regulation of methylation-dependent chromatin silencing
positive regulation of mRNA modification

Function(s)

RNA binding
mRNA binding
cytidine deaminase activity
cytosine deaminase activity
protein binding
enzyme activator activity
zinc ion binding
AU-rich element binding
protein domain specific binding
ribonucleoprotein complex binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR12015490.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12015490.hg.1	NM_001644.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12015490.hg.1	TC12001163.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR12015486.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12015486.hg.1	NM_001644.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12015486.hg.1	TC12001163.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR12015491.hg.1	NM_001644.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12015491.hg.1	TC12001163.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	ENST00000467171.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	ENST00000467171.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	ENST00000467171.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	ENST00000467171.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_001304566.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_001304566.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_001304566.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_001304566.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_001304566.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_001644.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_001644.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_001644.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_001644.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_001644.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_005889.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_005889.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_005889.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200009789.hg.1	NM_005889.3	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	ENST00000467171.2	Ensembl
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	ENST00000467171.2	Ensembl
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	ENST00000467171.2	Ensembl
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	ENST00000467171.2	Ensembl
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_001304566.1	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_001304566.1	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_001304566.1	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_001304566.1	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_001304566.1	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_001644.4	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_001644.4	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_001644.4	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_001644.4	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_001644.4	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_005889.3	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_005889.3	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_005889.3	Refseq
Affymetrix Human Clariom D Assay	TC1200009789.hg.1	NM_005889.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200173546.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1200173546.hg.1	NM_001304566.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200173546.hg.1	NM_001644.4	Refseq
Affymetrix Human Clariom D Assay	PSR1200173546.hg.1	ENST00000229304.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1200173546.hg.1	NM_001304566.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200173546.hg.1	NM_001644.4	Refseq
Affymetrix Human Clariom D Assay	PSR1200173546.hg.1	TC1200009789.hg.1	Clariom D TC

Array Name	Probe IDs	Targets	Target Type
ABI Human Genome Survey Microarray Version 2.0	154821	-	-