Hs00935221_g1

• Gene Symbol: PTPRK
• Gene Name: protein tyrosine phosphatase, receptor type K
• Gene Aliases: R-PTP-kappa
• Chromosome Location: Chr.6: 127968779 - 128520847 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: PTPRK
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001135648.2	NP_001129120.1	18 - 19	3163		111
	NM_001291981.1	NP_001278910.1	20 - 21	3211		111
	XM_006715537.2	XP_006715600.1	18 - 19	3211		111
	XM_011536014.2	XP_011534316.1	20 - 21	3259		111
	XM_011536015.2	XP_011534317.1	19 - 20	3250		111
	XM_011536017.2	XP_011534319.1	21 - 22	3502		111
	XM_011536018.2	XP_011534320.1	21 - 22	3175		111
	XM_017011145.1	XP_016866634.1	19 - 20	3178		111
	XM_017011146.1	XP_016866635.1	19 - 20	3127		111
	XM_017011147.1	XP_016866636.1	19 - 20	3105		111
	XM_017011149.1	XP_016866638.1	8 - 9	763		111
	XM_017011150.1	XP_016866639.1	7 - 8	750		111
GenBank mRNA	BC140775.1	-	18 - 19	2965	9021643	111
	BC144512.1	-	18 - 19	2965	9053039	111
	BC144513.1	-	20 - 21	3013	9053040	111

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600013126.hg.1

• Set Membership: Amplicon length greater than or equal to 101, Protein Phosphatase, Mammalian Gene Collection, Detect Genomic DNA, Homo sapiens, Probe spans exons

Panther Classification:

Molecular Function -

extracellular matrix glycoprotein, protein phosphatase, protein modifying enzyme

Gene Ontology Categories:

Process(es)

protein dephosphorylation
cell adhesion
signal transduction
transforming growth factor beta receptor signaling pathway
negative regulation of cell proliferation
negative regulation of keratinocyte proliferation
cell migration
negative regulation of cell migration
neuron projection development
protein localization to cell surface
cellular response to reactive oxygen species
cellular response to UV
peptidyl-tyrosine dephosphorylation
negative regulation of cell cycle
negative regulation of transcription, DNA-templated
focal adhesion assembly

Function(s)

protein tyrosine phosphatase activity
transmembrane receptor protein tyrosine phosphatase activity
protein binding
beta-catenin binding
protein kinase binding
gamma-catenin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000368207.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000368210.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000368213.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000368215.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000368226.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000415046.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000415055.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000532331.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	NM_001291984.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	NM_002844.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000368207.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000368210.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000368213.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000368215.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000368226.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000415046.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000415055.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	ENST00000532331.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	NM_001291984.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	NM_002844.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600190537.hg.1	TC0600013126.hg.1	Clariom D TC