Hs00936490_m1

• Gene Symbol: FOXA2
• Gene Name: forkhead box A2
• Gene Aliases: HNF3B, TCF3B
• Chromosome Location: Chr.20: 22581004 - 22585463 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: FOXA2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_153675.2	NP_710141.1	1 - 2	190		93
GenBank mRNA	AB028021.1	-	1 - 2	196		93
	BQ643619.1	-		191		93

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC2000008636.hg.1
This assay targets the same location as HTA transcript cluster(s) TC20000698.hg.1

Additional Information:

This assay is in the 5'UTR region of the AB028021.1,NM_153675.2 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Homo sapiens, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene FOXA2

Panther Classification:

Molecular Function -

winged helix/forkhead transcription factor

Gene Ontology Categories:

Process(es)

positive regulation of transcription from RNA polymerase II promoter by glucose
negative regulation of transcription from RNA polymerase II promoter by glucose
cell fate specification
transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
adult locomotory behavior
negative regulation of epithelial to mesenchymal transition
covalent chromatin modification
regulation of blood coagulation
endocrine pancreas development
negative regulation of glucokinase activity
positive regulation of embryonic development
negative regulation of sequence-specific DNA binding transcription factor activity
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
regulation of insulin secretion involved in cellular response to glucose stimulus
response to interleukin-6
dopaminergic neuron differentiation
primitive streak formation
positive regulation of cell-cell adhesion mediated by cadherin
positive regulation of gastrulation
negative regulation of detection of glucose

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor binding
protein domain specific binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	ENST00000377115.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	ENST00000377115.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	ENST00000377115.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	ENST00000377115.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	ENST00000377115.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	ENST00000419308.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	ENST00000419308.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	ENST00000419308.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	ENST00000419308.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	ENST00000419308.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	NM_021784.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	NM_021784.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	NM_021784.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	NM_021784.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	NM_021784.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	NM_153675.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	NM_153675.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	NM_153675.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	NM_153675.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2000008636.hg.1	NM_153675.2	Refseq

Array Name	Probe IDs	Targets	Target Type
ABI Human Genome Survey Microarray Version 2.0	135915	-	-