Hs00943558_m1

• Gene Symbol: RUBCN
• Gene Name: RUN and cysteine rich domain containing beclin 1 interacting protein
• Gene Aliases: KIAA0226, RUBICON, SCAR15
• Chromosome Location: Chr.3: 197670213 - 197749851 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: RUBCN
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001145642.3	NP_001139114.1	12 - 13	2197		64
	NM_014687.2	NP_055502.1	11 - 12	1993		64
	XM_005269374.3	XP_005269431.1	12 - 13	2033		64
	XM_017007544.1	XP_016863033.1	11 - 12	1879		64
	XM_017007545.1	XP_016863034.1	11 - 12	2195		64
GenBank mRNA	D86979.3	-	12 - 13	1886		64

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300013763.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03002182.hg.1

• Set Membership: Amplicon length less than or equal to 70, Homo sapiens, Probe spans exons

Gene Ontology Categories:

Process(es)

immune system process
phagocytosis
negative regulation of autophagy
negative regulation of phosphatidylinositol 3-kinase activity
negative regulation of endocytosis
multivesicular body sorting pathway
autophagosome maturation
negative regulation of autophagosome maturation

Function(s)

protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR03038555.hg.1	ENST00000273582.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03038555.hg.1	ENST00000296343.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03038555.hg.1	ENST00000389665.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03038555.hg.1	NM_001145642.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03038555.hg.1	NM_014687.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03038555.hg.1	TC03002182.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	ENST00000273582.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	ENST00000296343.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	ENST00000413360.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	ENST00000415452.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	ENST00000471364.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	NM_001145642.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	NM_014687.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	TC0300013763.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	ENST00000296343.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	ENST00000273582.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	ENST00000413360.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	ENST00000415452.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	ENST00000471364.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	NM_001145642.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300202956.hg.1	NM_014687.3	Refseq