Hs00958421_g1

• Gene Symbol: CHD4
• Gene Name: chromodomain helicase DNA binding protein 4
• Gene Aliases: CHD-4, Mi-2b, Mi2-BETA
• Chromosome Location: Chr.12: 6570082 - 6607439 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CHD4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001273.3	NP_001264.2	30 - 31	4727		81
	NM_001297553.1	NP_001284482.1	29 - 30	4572		81
	XM_005253668.3	XP_005253725.1	30 - 31	4658		81
	XM_006718958.1	XP_006719021.1	29 - 30	4817		81
	XM_006718959.1	XP_006719022.1	30 - 31	4733		81
	XM_006718960.1	XP_006719023.1	30 - 31	4730		81
	XM_006718961.2	XP_006719024.1	30 - 31	4658		81
	XM_006718962.1	XP_006719025.1	30 - 31	4694		81
	XM_017018725.1	XP_016874214.1	30 - 31	4733		81
	XM_017018726.1	XP_016874215.1	30 - 31	4733		81
	XM_017018727.1	XP_016874216.1	30 - 31	4730		81
	XM_017018728.1	XP_016874217.1	30 - 31	4730		81
	XM_017018729.1	XP_016874218.1	30 - 31	4658		81
	XM_017018730.1	XP_016874219.1	30 - 31	4694		81
	XM_017018731.1	XP_016874220.1	30 - 31	4694		81
	XM_017018732.1	XP_016874221.1	30 - 31	4619		81
	XM_017018733.1	XP_016874222.1	30 - 31	4619		81
	XM_017018734.1	XP_016874223.1	30 - 31	4619		81
GenBank mRNA	AK128741.1	-	29 - 30	4617		81
	BC038596.1	-	29 - 30	4752	5528023	81
	CR936680.1	-	29 - 30	4480		81
	X86691.1	-	29 - 30	4604		81

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1200009742.hg.1
This assay targets the same location as HTA transcript cluster(s) TC12001143.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CHD4

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
histone deacetylation
DNA duplex unwinding
ATP-dependent chromatin remodeling
spindle assembly
terminal button organization
regulation of signal transduction by p53 class mediator

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
RNA polymerase II repressing transcription factor binding
DNA binding
ATP-dependent DNA helicase activity
histone deacetylase activity
protein binding
ATP binding
microtubule binding
zinc ion binding
nucleosomal DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR12015034.hg.1	ENST00000309577.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12015034.hg.1	ENST00000357008.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12015034.hg.1	ENST00000537464.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12015034.hg.1	ENST00000544040.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12015034.hg.1	ENST00000544484.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12015034.hg.1	NM_001273.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12015034.hg.1	TC12001143.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	ENST00000357008.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	ENST00000544040.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	ENST00000544484.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	NM_001273.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	NM_001297553.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	ENST00000357008.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	ENST00000544040.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	ENST00000544484.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	NM_001273.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	NM_001297553.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200172868.hg.1	TC1200009742.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	ENST00000357008.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	ENST00000544040.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	ENST00000544484.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	NM_001273.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	NM_001297553.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	ENST00000357008.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	ENST00000544040.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	ENST00000544484.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	NM_001273.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	NM_001297553.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200172869.hg.1	TC1200009742.hg.1	Clariom D TC