Hs00974149_m1

• Gene Symbol: CDH23
• Gene Name: cadherin-related 23
• Gene Aliases: CDHR23, USH1D
• Chromosome Location: Chr.10: 71396934 - 71815947 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CDH23
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001171930.1	NP_001165401.1	29 - 30	3814		66
	NM_022124.5	NP_071407.4	29 - 30	3814		66
	XM_006717940.3	XP_006718003.1	30 - 31	3868		66
	XM_006717942.3	XP_006718005.1	28 - 29	3802		66
	XM_011540039.2	XP_011538341.1	30 - 31	3868		66
	XM_011540042.2	XP_011538344.1	30 - 31	3868		66
	XM_011540043.2	XP_011538345.1	30 - 31	3868		66
	XM_011540044.2	XP_011538346.1	30 - 31	3509		66
	XM_011540045.2	XP_011538347.1	30 - 31	3868		66
	XM_011540046.2	XP_011538348.1	25 - 26	3303		66
	XM_011540047.2	XP_011538349.1	19 - 20	2603		66
	XM_011540048.2	XP_011538350.1	30 - 31	3868		66
	XM_011540049.2	XP_011538351.1	30 - 31	3868		66
	XM_011540051.2	XP_011538353.1	30 - 31	3868		66
	XM_011540052.2	XP_011538354.1	2 - 3	143		66
	XM_017016499.1	XP_016871988.1	29 - 30	3814		66
	XM_017016500.1	XP_016871989.1	30 - 31	3868		66
	XM_017016501.1	XP_016871990.1	9 - 10	1370		66
	XM_017016502.1	XP_016871991.1	9 - 10	1558		66
GenBank mRNA	AF312024.1	-	28 - 29	3424		66
	AY010111.2	-	28 - 29	3424		66
	BC065284.1	-	29 - 30	3791		66

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1000007959.hg.1
This assay targets the same location as HTA transcript cluster(s) TC10000442.hg.1

Additional Information:

This assay is in the 5'UTR region of the XM_011540052.2 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CDH23

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

calcium ion transport
homophilic cell adhesion via plasma membrane adhesion molecules
visual perception
sensory perception of sound
locomotory behavior
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
photoreceptor cell maintenance
response to stimulus
sensory perception of light stimulus
equilibrioception
regulation of cytosolic calcium ion concentration
inner ear receptor stereocilium organization

Function(s)

calcium ion binding
protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR10005220.hg.1	ENST00000224721.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR10005220.hg.1	ENST00000398855.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR10005220.hg.1	ENST00000398860.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR10005220.hg.1	NM_001171930.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR10005220.hg.1	NM_022124.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR10005220.hg.1	TC10000442.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	ENST00000224721.10	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	ENST00000398809.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	ENST00000616684.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	ENST00000622827.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	NM_001171930.1	Refseq
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	NM_022124.5	Refseq
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	ENST00000224721.10	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	ENST00000398809.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	ENST00000616684.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	ENST00000622827.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	NM_001171930.1	Refseq
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	NM_022124.5	Refseq
Affymetrix Human Clariom D Assay	PSR1000154047.hg.1	TC1000007959.hg.1	Clariom D TC