Hs00977391_m1 Best Coverage

• Gene Symbol: COL6A5
• Gene Name: collagen type VI alpha 5
• Gene Aliases: COL29A1, VWA4
• Chromosome Location: Chr.3: 130345516 - 130484846 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: COL6A5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001278298.1	NP_001265227.1	20 - 21	5151		61
	NM_153264.6	NP_694996.5	20 - 21	5151		61
	NR_022012.2		20 - 21	5151		61
	XM_011512621.2	XP_011510923.1	20 - 21	5025		61
	XM_011512622.2	XP_011510924.1	20 - 21	5025		61
	XM_011512623.2	XP_011510925.1	20 - 21	5025		61
GenBank mRNA	AM906081.1	-	12 - 13	1093		61
	EU085556.1	-	20 - 21	5151		61

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300008818.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03000704.hg.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Recommended Assay, Homo sapiens, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene COL6A5

Gene Ontology Categories:

Process(es)

cell adhesion
collagen catabolic process

Function(s)

protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR03012530.hg.1	ENST00000265379.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012530.hg.1	ENST00000432398.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012530.hg.1	NM_153264.6	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03012530.hg.1	NR_022012.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03012530.hg.1	TC03000704.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	ENST00000265379.10	Ensembl
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	ENST00000312481.11	Ensembl
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	NM_001278298.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	NM_153264.6	Refseq
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	NR_022012.2	Refseq
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	TC0300008818.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	ENST00000265379.10	Ensembl
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	ENST00000312481.11	Ensembl
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	NM_001278298.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	NM_153264.6	Refseq
Affymetrix Human Clariom D Assay	PSR0300162721.hg.1	NR_022012.2	Refseq