Hs00977894_g1

• Gene Symbol: CDK9
• Gene Name: cyclin dependent kinase 9
• Gene Aliases: C-2k, CDC2L4, CTK1, PITALRE, TAK
• Chromosome Location: Chr.9: 127786026 - 127790782 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CDK9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001261.3	NP_001252.1	4 - 5	557		67
	XM_017014184.1	XP_016869673.1	4 - 5	617		67
GenBank mRNA	AB451289.1	-	4 - 5	434		67
	AB451421.1	-	4 - 5	434		67
	AK313828.1	-	4 - 5	486		67
	BC001968.1	-	4 - 5	494	3460767	67
	BT019903.1	-	4 - 5	434		67
	L25676.1	-	4 - 5	498		67
	X80230.1	-	4 - 5	532		67

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0900012175.hg.1
This assay targets the same location as HTA transcript cluster(s) TC09000671.hg.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Protein Kinase, Mammalian Gene Collection, Detect Genomic DNA, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CDK9

Panther Classification:

Molecular Function -

non-receptor serine/threonine protein kinase

Gene Ontology Categories:

Process(es)

DNA repair
regulation of DNA repair
transcription from RNA polymerase II promoter
transcription initiation from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
protein phosphorylation
regulation of mitotic cell cycle
cell proliferation
positive regulation of cardiac muscle hypertrophy
regulation of histone modification
replication fork processing
positive regulation of histone phosphorylation
response to drug
snRNA transcription from RNA polymerase II promoter
positive regulation of transcription from RNA polymerase II promoter
positive regulation of viral transcription
regulation of muscle cell differentiation
negative regulation of cell cycle arrest
cellular response to cytokine stimulus
negative regulation of mRNA polyadenylation
positive regulation of mRNA 3'-UTR binding
positive regulation of histone H2B ubiquitination

Function(s)

RNA polymerase II core promoter sequence-specific DNA binding
transcription coactivator binding
DNA binding
chromatin binding
protein kinase activity
protein serine/threonine kinase activity
cyclin-dependent protein serine/threonine kinase activity
protein binding
ATP binding
RNA polymerase II carboxy-terminal domain kinase activity
kinase activity
7SK snRNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000491521.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000491521.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000491521.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000491521.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000498339.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000498339.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000498339.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	ENST00000498339.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR09008017.hg.1	TC09000671.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR09008017.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09008017.hg.1	ENST00000373265.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09008017.hg.1	ENST00000480353.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09008017.hg.1	NM_001261.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR09008016.hg.1	TC09000671.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR09008016.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09008016.hg.1	ENST00000373265.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09008016.hg.1	ENST00000480353.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09008016.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000491521.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000491521.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000491521.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000491521.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000498339.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000498339.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000498339.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	ENST00000498339.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	TC0900012175.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	PSR0900184731.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	PSR0900184731.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0900184731.hg.1	ENST00000491521.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900184731.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	PSR0900184731.hg.1	ENST00000373264.4	Ensembl
Affymetrix Human Clariom D Assay	PSR0900184731.hg.1	ENST00000480353.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0900184731.hg.1	ENST00000491521.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900184731.hg.1	NM_001261.3	Refseq
Affymetrix Human Clariom D Assay	PSR0900184731.hg.1	TC0900012175.hg.1	Clariom D TC