Hs00979701_m1

• Gene Symbol: SMG1
• Gene Name: SMG1, nonsense mediated mRNA decay associated PI3K related kinase
• Gene Aliases: 61E3.4, ATX, LIP
• Chromosome Location: Chr.16: 18804853 - 18926417 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SMG1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_015092.4	NP_055907.3	50 - 51	8928		140
	XM_005255182.3	XP_005255239.1	49 - 50	9025		140
	XM_005255183.3	XP_005255240.1	50 - 51	9083		140
	XM_005255184.3	XP_005255241.1	48 - 49	8869		140
	XM_011545769.2	XP_011544071.1	49 - 50	9025		140
	XM_011545770.1	XP_011544072.1	37 - 38	6822		140
	XM_017023066.1	XP_016878555.1	49 - 50	8835		140
	XM_017023067.1	XP_016878556.1	37 - 38	6885		140
GenBank mRNA	AB007881.2	-	18 - 19	3546		140
	AB061371.1	-	51 - 52	8880		140
	AF186377.1	-	25 - 26	4909		140
	AF395444.1	-	48 - 49	8235		140
	AL833298.1	-	11 - 12	2266		140
	AY014957.1	-	38 - 39	6807		140

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1600009620.hg.1
This assay targets the same location as HTA transcript cluster(s) TC16000916.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Protein Kinase, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SMG1

Panther Classification:

Molecular Function -

non-receptor serine/threonine protein kinase, protein modifying enzyme

Gene Ontology Categories:

Process(es)

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
telomere maintenance
DNA repair
mRNA export from nucleus
response to stress
peptidyl-serine phosphorylation
protein autophosphorylation
phosphatidylinositol phosphorylation

Function(s)

protein kinase activity
protein serine/threonine kinase activity
protein binding
ATP binding
telomeric DNA binding
poly(A) RNA binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR16013136.hg.1	ENST00000389467.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16013136.hg.1	ENST00000446231.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16013136.hg.1	NM_015092.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16013136.hg.1	TC16000916.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1600173591.hg.1	ENST00000446231.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1600173591.hg.1	ENST00000565324.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600173591.hg.1	NM_015092.4	Refseq
Affymetrix Human Clariom D Assay	PSR1600173591.hg.1	ENST00000446231.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1600173591.hg.1	ENST00000565324.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600173591.hg.1	NM_015092.4	Refseq
Affymetrix Human Clariom D Assay	PSR1600173591.hg.1	TC1600009620.hg.1	Clariom D TC