Hs00988007_m1

• Gene Symbol: SS18L1
• Gene Name: SS18L1, nBAF chromatin remodeling complex subunit
• Gene Aliases: CREST, LP2261
• Chromosome Location: Chr.20: 62143720 - 62182510 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SS18L1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001301778.1	NP_001288707.1	3 - 4	431		60
	NM_198935.2	NP_945173.1	2 - 3	246		60
	NR_125981.1		2 - 3	246		60
	XM_005260389.3	XP_005260446.1	2 - 3	201		60
	XM_005260391.1	XP_005260448.1	3 - 4	385		60
	XM_011528764.2	XP_011527066.1	3 - 4	1377		60
	XM_017027784.1	XP_016883273.1	2 - 3	567		60
GenBank mRNA	AB014593.1	-	2 - 3	171		60
	AK125656.1	-	3 - 4	406		60
	AK291485.1	-	2 - 3	221		60
	AK299881.1	-	2 - 3	221		60
	BC034494.2	-	2 - 3	200	4823298	60
	BX640848.1	-	3 - 4	383		60
	DC375156.1	-	2 - 3	246		60

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC2000007992.hg.1
This assay targets the same location as HTA transcript cluster(s) TC20000483.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK125656.1,NM_001301778.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SS18L1

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
dendrite development
covalent chromatin modification
positive regulation of transcription, DNA-templated
positive regulation of dendrite morphogenesis

Function(s)

protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR20006751.hg.1	ENST00000331758.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR20006751.hg.1	ENST00000370848.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR20006751.hg.1	ENST00000421564.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR20006751.hg.1	NM_198935.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR20006751.hg.1	TC20000483.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	ENST00000331758.7	Ensembl
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	ENST00000450482.5	Ensembl
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	NM_001301778.1	Refseq
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	NM_198935.2	Refseq
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	NR_125980.1	Refseq
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	NR_125981.1	Refseq
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	TC2000007992.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	ENST00000331758.7	Ensembl
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	ENST00000450482.5	Ensembl
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	NM_001301778.1	Refseq
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	NM_198935.2	Refseq
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	NR_125980.1	Refseq
Affymetrix Human Clariom D Assay	PSR2000155566.hg.1	NR_125981.1	Refseq