Hs00997501_m1

• Gene Symbol: ATRX
• Gene Name: ATRX, chromatin remodeler
• Gene Aliases: ATR2, JMS, MRX52, MRXHF1, RAD54, RAD54L, SFM1, SHS, XH2, XNP, ZNF-HX
• Chromosome Location: Chr.X: 77504878 - 77786269 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: ATRX
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_000489.4	NP_000480.3	10 - 11	4070		117
	NM_138270.3	NP_612114.2	9 - 10	3956		117
	XM_005262153.4	XP_005262210.2	10 - 11	4067		117
	XM_005262154.4	XP_005262211.2	11 - 12	3983		117
	XM_005262155.4	XP_005262212.2	10 - 11	4171		117
	XM_005262156.4	XP_005262213.2	9 - 10	3923		117
	XM_005262157.4	XP_005262214.2	10 - 11	3866		117
	XM_006724666.3	XP_006724729.1	9 - 10	3953		117
	XM_006724667.3	XP_006724730.1	8 - 9	3809		117
	XM_006724668.2	XP_006724731.1	10 - 11	4070		117
	XM_017029601.1	XP_016885090.1	11 - 12	3980		117
	XM_017029602.1	XP_016885091.1	10 - 11	4151		117
	XM_017029603.1	XP_016885092.1	9 - 10	3920		117
	XM_017029604.1	XP_016885093.1	10 - 11	3869		117
	XM_017029605.1	XP_016885094.1	11 - 12	4084		117
	XM_017029606.1	XP_016885095.1	9 - 10	4057		117
	XM_017029607.1	XP_016885096.1	9 - 10	4054		117
	XM_017029608.1	XP_016885097.1	8 - 9	3806		117
	XM_017029609.1	XP_016885098.1	10 - 11	3970		117
	XM_017029610.1	XP_016885099.1	10 - 11	3967		117
	XM_017029611.1	XP_016885100.1	9 - 10	3722		117
GenBank mRNA	AB102641.1	-	10 - 11	3802		117
	AB208928.1	-	10 - 11	3797		117
	AB209545.1	-	2 - 3	1695		117
	AK293241.1	-	2 - 3	1336		117
	U09820.1	-	2 - 3	1278		117
	U72936.2	-	11 - 12	4139		117
	U72937.2	-	10 - 11	4017		117
	U72938.2	-	9 - 10	3903		117

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0X00010126.hg.1
This assay targets the same location as HTA transcript cluster(s) TC0X001173.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene ATRX

Panther Classification:

Molecular Function -

DNA-binding transcription factor, gene-specific transcriptional regulator

Gene Ontology Categories:

Process(es)

DNA repair
DNA methylation
DNA recombination
nucleosome assembly
DNA replication-independent nucleosome assembly
chromatin remodeling
transcription, DNA-templated
regulation of transcription, DNA-templated
spermatogenesis
positive regulation of nuclear cell cycle DNA replication
covalent chromatin modification
DNA damage response, signal transduction by p53 class mediator
forebrain development
replication fork processing
positive regulation of telomere maintenance
DNA duplex unwinding
post-embryonic forelimb morphogenesis
multicellular organism growth
positive regulation of transcription from RNA polymerase II promoter
Sertoli cell development
protein localization to chromosome, telomeric region
seminiferous tubule development
cellular response to hydroxyurea
regulation of histone H3-K9 trimethylation
negative regulation of telomeric RNA transcription from RNA pol II promoter
positive regulation of telomeric RNA transcription from RNA pol II promoter
negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric

Function(s)

DNA binding
DNA helicase activity
chromatin binding
helicase activity
protein binding
ATP binding
DNA translocase activity
methylated histone binding
histone binding
metal ion binding
chromo shadow domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR0X015782.hg.1	TC0X001173.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR0X015782.hg.1	ENST00000373344.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X015782.hg.1	ENST00000395603.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X015782.hg.1	ENST00000400862.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X015782.hg.1	ENST00000480283.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X015782.hg.1	NM_000489.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X015782.hg.1	NM_138270.3	Refseq
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	ENST00000373344.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	ENST00000395603.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	ENST00000480283.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	ENST00000624166.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	NM_000489.4	Refseq
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	NM_138270.3	Refseq
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	ENST00000373344.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	ENST00000395603.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	ENST00000480283.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	ENST00000624166.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	NM_000489.4	Refseq
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	NM_138270.3	Refseq
Affymetrix Human Clariom D Assay	PSR0X00169124.hg.1	TC0X00010126.hg.1	Clariom D TC