Hs00997520_m1

• Gene Symbol: ATRX
• Gene Name: ATRX, chromatin remodeler
• Gene Aliases: ATR2, JMS, MRX52, MRXHF1, RAD54, RAD54L, SFM1, SHS, XH2, XNP, ZNF-HX
• Chromosome Location: Chr.X: 77504878 - 77786269 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: ATRX
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_000489.4	NP_000480.3	28 - 29	6599		143
	NM_138270.3	NP_612114.2	27 - 28	6485		143
	XM_005262153.4	XP_005262210.2	28 - 29	6596		143
	XM_005262154.4	XP_005262211.2	29 - 30	6512		143
	XM_005262155.4	XP_005262212.2	28 - 29	6700		143
	XM_005262156.4	XP_005262213.2	27 - 28	6452		143
	XM_005262157.4	XP_005262214.2	28 - 29	6395		143
	XM_006724666.3	XP_006724729.1	27 - 28	6482		143
	XM_006724667.3	XP_006724730.1	26 - 27	6338		143
	XM_017029601.1	XP_016885090.1	29 - 30	6509		143
	XM_017029602.1	XP_016885091.1	28 - 29	6680		143
	XM_017029603.1	XP_016885092.1	27 - 28	6449		143
	XM_017029604.1	XP_016885093.1	28 - 29	6398		143
	XM_017029605.1	XP_016885094.1	29 - 30	6613		143
	XM_017029606.1	XP_016885095.1	27 - 28	6586		143
	XM_017029607.1	XP_016885096.1	27 - 28	6583		143
	XM_017029608.1	XP_016885097.1	26 - 27	6335		143
	XM_017029609.1	XP_016885098.1	28 - 29	6499		143
	XM_017029610.1	XP_016885099.1	28 - 29	6496		143
	XM_017029611.1	XP_016885100.1	27 - 28	6251		143
GenBank mRNA	AB102641.1	-	28 - 29	6331		143
	AK295107.1	-	11 - 12	1451		143
	AK296959.1	-	7 - 8	834		143
	BX647222.1	-	3 - 4	3403		143
	U09820.1	-	20 - 21	3810		143
	U72936.2	-	29 - 30	6668		143
	U72937.2	-	28 - 29	6546		143
	U72938.2	-	27 - 28	6432		143

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0X00010126.hg.1
This assay targets the same location as HTA transcript cluster(s) TC0X001173.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene ATRX

Panther Classification:

Molecular Function -

DNA-binding transcription factor, gene-specific transcriptional regulator

Gene Ontology Categories:

Process(es)

DNA repair
DNA methylation
DNA recombination
nucleosome assembly
DNA replication-independent nucleosome assembly
chromatin remodeling
transcription, DNA-templated
regulation of transcription, DNA-templated
spermatogenesis
positive regulation of nuclear cell cycle DNA replication
covalent chromatin modification
DNA damage response, signal transduction by p53 class mediator
forebrain development
replication fork processing
positive regulation of telomere maintenance
DNA duplex unwinding
post-embryonic forelimb morphogenesis
multicellular organism growth
positive regulation of transcription from RNA polymerase II promoter
Sertoli cell development
protein localization to chromosome, telomeric region
seminiferous tubule development
cellular response to hydroxyurea
regulation of histone H3-K9 trimethylation
negative regulation of telomeric RNA transcription from RNA pol II promoter
positive regulation of telomeric RNA transcription from RNA pol II promoter
negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric

Function(s)

DNA binding
DNA helicase activity
chromatin binding
helicase activity
protein binding
ATP binding
DNA translocase activity
methylated histone binding
histone binding
metal ion binding
chromo shadow domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR0X015759.hg.1	TC0X001173.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR0X015759.hg.1	ENST00000373344.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X015759.hg.1	ENST00000395603.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X015759.hg.1	ENST00000480283.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X015759.hg.1	NM_000489.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X015759.hg.1	NM_138270.3	Refseq
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	ENST00000373344.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	ENST00000395603.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	ENST00000480283.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	ENST00000623706.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	NM_000489.4	Refseq
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	NM_138270.3	Refseq
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	ENST00000373344.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	ENST00000395603.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	ENST00000480283.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	ENST00000623706.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	NM_000489.4	Refseq
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	NM_138270.3	Refseq
Affymetrix Human Clariom D Assay	PSR0X00169089.hg.1	TC0X00010126.hg.1	Clariom D TC