Hs01007435_g1

• Gene Symbol: COL4A1
• Gene Name: collagen type IV alpha 1 chain
• Gene Aliases: BSVD, RATOR
• Chromosome Location: Chr.13: 110148958 - 110307157 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: COL4A1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001303110.1	NP_001290039.1	14 - 15	934		81
	NM_001845.5	NP_001836.3	14 - 15	934		81
	XM_011521048.2	XP_011519350.1	14 - 15	8866		81
GenBank mRNA	AB209646.1	-	14 - 15	919		81
	BC142626.1	-	14 - 15	908		81
	BC151220.1	-	14 - 15	918	40148649	81
	X05561.1	-	14 - 15	926		81
	Y00706.1	-	12 - 13	669		81

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1300009781.hg.1
This assay targets the same location as HTA transcript cluster(s) TC13000872.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene COL4A1

Panther Classification:

Molecular Function -

extracellular matrix structural protein

Gene Ontology Categories:

Process(es)

patterning of blood vessels
brain development
neuromuscular junction development
extracellular matrix organization
collagen catabolic process
epithelial cell differentiation
blood vessel morphogenesis
retinal blood vessel morphogenesis
renal tubule morphogenesis
cellular response to amino acid stimulus
basement membrane organization

Function(s)

extracellular matrix structural constituent
protein binding
extracellular matrix constituent conferring elasticity
platelet-derived growth factor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR13009756.hg.1	ENST00000375815.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009756.hg.1	ENST00000375820.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009756.hg.1	ENST00000397198.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009756.hg.1	ENST00000543140.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009756.hg.1	NM_001845.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13009756.hg.1	TC13000872.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	ENST00000375820.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	ENST00000543140.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	ENST00000615732.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	NM_001303110.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	NM_001845.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	ENST00000375820.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	ENST00000543140.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	ENST00000615732.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	NM_001303110.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	NM_001845.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300165207.hg.1	TC1300009781.hg.1	Clariom D TC