Assay Details

Gene Symbol: FAM166A
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_006717108.2	XP_006717171.2	1	828		103
	XM_011518694.1	XP_011516996.1	1	828		103
	XM_011518695.1	XP_011516997.1	1	828		103
	XM_011518696.2	XP_011516998.1	1	828		103
	XM_011518697.1	XP_011516999.1	1	828		103
	XM_017014718.1	XP_016870207.1	1	828		103

Gene Symbol: C9orf173-AS1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038389.1		4	1554		103
GenBank mRNA	AK097764.1	-	4			103
GenBank mRNA	CB047271.1	-	1			103

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	AL042345.1	-	1		Chr. 9 - 137250231 - 137250573 [+] on Build GRCh38	103
GenBankmRNA	BM919551.1	-		429	Chr. - - [-] on Build	103
GenBankmRNA	AI628548.1	-	1		Chr. 9 - 137250238 - 137250712 [+] on Build GRCh38	103
GenBankmRNA	DB300894.1	-	1		Chr. 9 - 137250224 - 137250784 [+] on Build GRCh38	103
GenBankmRNA	DB338548.1	-	1		Chr. 9 - 137250219 - 137250752 [+] on Build GRCh38	103
GenBankmRNA	AI452390.1	-	1		Chr. 9 - 137250221 - 137250620 [+] on Build GRCh38	103
GenBankmRNA	AA778183.1	-	1		Chr. 9 - 137250219 - 137250734 [+] on Build GRCh38	102
GenBankmRNA	CB856523.1	-	1	329	Chr. 9 - 137250236 - 137250694 [-] on Build GRCh38	103
GenBankmRNA	BX103784.1	-	1		Chr. 9 - 137250236 - 137250681 [+] on Build GRCh38	103
GenBankmRNA	CB856522.1	-	1		Chr. 9 - 137250236 - 137250694 [+] on Build GRCh38	103
GenBankmRNA	BF061435.1	-	1		Chr. 9 - 137250221 - 137250682 [+] on Build GRCh38	103

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	sperm-tail PG-rich repeat containing 3	STPG3	C9orf173		Anti-sense	Chr. 9 - 137250840 - 137253483 on NCBI Build GRCh38
Downstream	negative elongation factor complex member B	NELFB	COBRA1, NELF-B	3.9kb	Anti-sense	Chr. 9 - 137255300 - 137273548 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0900012049.hg.1
This assay targets the same location as HTA transcript cluster(s) TC09001768.hg.1

Additional Information:

This assay is in the 5'UTR region of the XM_006717108.2,XM_011518694.1,XM_011518695.1,XM_011518696.2,XM_011518697.1,XM_017014718.1 transcripts.

Set Membership:

Amplicon length greater than or equal to 101

3' Most

Detect Genomic DNA

Homo sapiens

1700

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ArrayStar ABI Illumina

Array Name	Probe IDs	Targets	Target Type
Affymetrix HT HG-U133+ PM Array Plate	1566906_PM_at	-	-
Affymetrix HT HG-U133+ PM Array Plate	238093_PM_at	-	-
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR09022838.hg.1	TC09001768.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR09022838.hg.1	ENST00000416962.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09022838.hg.1	NR_038389.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR09022839.hg.1	TC09001768.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR09022839.hg.1	ENST00000416962.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09022839.hg.1	NR_038389.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR09022836.hg.1	TC09001768.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR09022836.hg.1	ENST00000416962.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09022836.hg.1	NR_038389.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR09022837.hg.1	TC09001768.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR09022837.hg.1	ENST00000416962.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09022837.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	TC0900012049.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182967.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182967.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182967.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182967.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182967.hg.1	TC0900012049.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0900182969.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182969.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182969.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182969.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182969.hg.1	TC0900012049.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0900182971.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182971.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182971.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182971.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182971.hg.1	TC0900012049.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0900182966.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182966.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182966.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182966.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182966.hg.1	TC0900012049.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0900182968.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182968.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182968.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182968.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182968.hg.1	TC0900012049.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0900182970.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182970.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182970.hg.1	ENST00000612170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900182970.hg.1	NR_038389.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900182970.hg.1	TC0900012049.hg.1	Clariom D TC
Human Genome U133 Plus 2.0 Array	238093_PM_at	-	-
Human Genome U133 Plus 2.0 Array	238093_at	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at8	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at10	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at6	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at9	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at1	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at7	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at11	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at3	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at5	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at2	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	238093_at4	-	-
Human Genome U95 Set	81676_PM_at	-	-
Human Genome U95 Set	81676_at	-	-
Human Genome U133 Set	238093_PM_at	-	-
Human Genome U133 Set	238093_at	-	-

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Catalog #	4426961
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Array Name	Probe IDs	Targets	Target Type
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3409580	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	29351	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3409580	-	-
SurePrint G3 Human GE Microarray G4851A	A_33_P3409580	-	-

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3187628	NR_038389.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3187628	AK097764.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3187628	BC144311.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3187628	BC033939.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3187628	BC144310.1	human_transcriptome

System Message

Genomic Map