Hs01009035_m1

• Gene Symbol: VCL
• Gene Name: vinculin
• Gene Aliases: CMD1W, CMH15, HEL114, MV, MVCL
• Chromosome Location: Chr.10: 73998114 - 74120160 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: VCL
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_003373.3	NP_003364.1	18 - 19	2837		67
GenBank mRNA	AK126978.1	-	18 - 19	3092		67
	AK296509.1	-	7 - 8	1108		67
	AK300280.1	-	4 - 5	618		67
	BC039174.1	-	18 - 19	2824	4520338	67
	BX537994.1	-	20 - 21	5547		67
	M33308.1	-	18 - 19	2793		67

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1000008056.hg.1
This assay targets the same location as HTA transcript cluster(s) TC10000476.hg.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene VCL

Gene Ontology Categories:

Process(es)

morphogenesis of an epithelium
platelet degranulation
movement of cell or subcellular component
muscle contraction
cell adhesion
cell-matrix adhesion
lamellipodium assembly
negative regulation of cell migration
adherens junction assembly
protein localization to cell surface
apical junction assembly
axon extension
platelet aggregation
epithelial cell-cell adhesion

Function(s)

dystroglycan binding
actin binding
structural molecule activity
protein binding
beta-catenin binding
ubiquitin protein ligase binding
alpha-catenin binding
cadherin binding
cadherin binding involved in cell-cell adhesion

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR10005661.hg.1	ENST00000211998.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR10005661.hg.1	ENST00000372755.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR10005661.hg.1	ENST00000415462.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR10005661.hg.1	ENST00000417648.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR10005661.hg.1	ENST00000537043.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR10005661.hg.1	NM_003373.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR10005661.hg.1	NM_014000.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR10005661.hg.1	TC10000476.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	ENST00000211998.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	ENST00000372755.7	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	ENST00000436396.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	ENST00000623461.3	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	ENST00000624354.3	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	NM_003373.3	Refseq
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	NM_014000.2	Refseq
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	TC1000008056.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	ENST00000372755.7	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	ENST00000211998.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	ENST00000436396.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	ENST00000623461.3	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	ENST00000624354.3	Ensembl
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	NM_003373.3	Refseq
Affymetrix Human Clariom D Assay	PSR1000154753.hg.1	NM_014000.2	Refseq