Hs01015879_m1

• Gene Symbol: SETD2
• Gene Name: SET domain containing 2
• Gene Aliases: HBP231, HIF-1, HIP-1, HSPC069, HYPB, KMT3A, LLS, SET2, p231HBP
• Chromosome Location: Chr.3: 47016408 - 47164109 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SETD2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_014159.6	NP_054878.5	12 - 13	6108		96
	XM_011533631.2	XP_011531933.1	13 - 14	7604		96
	XM_011533632.2	XP_011531934.1	12 - 13	6180		96
	XM_011533633.2	XP_011531935.1	12 - 13	7471		96
	XM_011533634.1	XP_011531936.1	12 - 13	6133		96
	XM_017006270.1	XP_016861759.1	10 - 11	7307		96
GenBank mRNA	AB051519.2	-	10 - 11	4108		96
	AJ238403.1	-	10 - 11	4955		96
	AY576987.1	-	10 - 11	4617		96
	BC090954.1	-	10 - 11	3898		96
	BC117162.1	-	10 - 11	4731	40125713	96
	BC117164.1	-	10 - 11	4731	40125715	96
	BX649110.1	-	10 - 11	5875		96

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300010968.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03001364.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SETD2

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein, histone modifying enzyme

Gene Ontology Categories:

Process(es)

angiogenesis
morphogenesis of a branching structure
neural tube closure
mismatch repair
regulation of transcription, DNA-templated
transcription elongation from RNA polymerase II promoter
regulation of mRNA export from nucleus
forebrain development
nucleosome organization
cell migration involved in vasculogenesis
mesoderm morphogenesis
embryonic cranial skeleton morphogenesis
stem cell development
pericardium development
embryonic placenta morphogenesis
coronary vasculature morphogenesis
histone H3-K36 trimethylation
histone H3-K36 dimethylation

Function(s)

protein binding
histone-lysine N-methyltransferase activity
histone methyltransferase activity (H3-K36 specific)

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR03023393.hg.1	TC03001364.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03023393.hg.1	ENST00000409792.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03023393.hg.1	ENST00000451092.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03023393.hg.1	ENST00000492397.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03023393.hg.1	ENST00000543224.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03023393.hg.1	NM_014159.6	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03023389.hg.1	TC03001364.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03023389.hg.1	ENST00000409792.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03023389.hg.1	ENST00000451092.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03023389.hg.1	ENST00000492397.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03023389.hg.1	ENST00000543224.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03023389.hg.1	NM_014159.6	Refseq
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	ENST00000330022.11	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	ENST00000409792.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	ENST00000431180.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	ENST00000445387.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	ENST00000492397.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	NM_014159.6	Refseq
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	ENST00000330022.11	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	ENST00000409792.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	ENST00000431180.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	ENST00000445387.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	ENST00000492397.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	NM_014159.6	Refseq
Affymetrix Human Clariom D Assay	PSR0300180080.hg.1	TC0300010968.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	ENST00000330022.11	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	ENST00000409792.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	ENST00000431180.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	ENST00000445387.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	ENST00000492397.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	NM_014159.6	Refseq
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	ENST00000330022.11	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	ENST00000409792.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	ENST00000431180.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	ENST00000445387.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	ENST00000492397.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	NM_014159.6	Refseq
Affymetrix Human Clariom D Assay	PSR0300180077.hg.1	TC0300010968.hg.1	Clariom D TC