Hs01017697_m1

Gene Symbol:

SENP3 SENP3-EIF4A1

Gene Name:

SUMO1/sentrin/SMT3 specific peptidase 3

SENP3-EIF4A1 readthrough (NMD candidate)

Gene Aliases:

SMT3IP1, SSP3, Ulp1

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Chromosome Location:

Chr.17: 7561992 - 7571969 on Build GRCh38

Chromosome Location:

Chr.17: 7561992 - 7579006 on Build GRCh38

Species:

Human

Species Specific ID (Flybase ID):

-

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Assay Details

Gene Symbol: SENP3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_015670.5	NP_056485.2	6 - 7	1544		86
GenBank mRNA	AF199459.1	-	6 - 7	1331		86
	AL050283.1	-	5 - 6	855		86
	AL834294.1	-	6 - 7	1338		86
	AY008763.1	-	6 - 7	1312		86
	BC048306.1	-	5 - 6	782		86
	BC080658.1	-	6 - 7	1526	6155941	86

Gene Symbol: SENP3-EIF4A1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_037926.1		6 - 7	1544		86

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1700012188.hg.1
This assay targets the same location as HTA transcript cluster(s) TC17002866.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SENP3
Click here to find siRNAs for Gene SENP3-EIF4A1

Panther Classification:

Molecular Function -

protease

Gene Ontology Categories:

Process(es)

rRNA processing
protein desumoylation

Function(s)

endopeptidase activity
protein binding
SUMO-specific protease activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR17001399.hg.1	TC17002866.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR17001399.hg.1	ENST00000321337.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR17001399.hg.1	ENST00000429205.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR17001399.hg.1	NM_015670.5	Refseq
Affymetrix Human Clariom D Assay	PSR1700200468.hg.1	ENST00000579777.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700200468.hg.1	ENST00000614237.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700200468.hg.1	NR_037926.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700200468.hg.1	ENST00000579777.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700200468.hg.1	ENST00000614237.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700200468.hg.1	NR_037926.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700200468.hg.1	TC1700012188.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1700200469.hg.1	ENST00000579777.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700200469.hg.1	ENST00000614237.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700200469.hg.1	NR_037926.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700200469.hg.1	ENST00000579777.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700200469.hg.1	ENST00000614237.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700200469.hg.1	NR_037926.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700200469.hg.1	TC1700012188.hg.1	Clariom D TC