Hs01026033_m1

Gene Symbol:

NPHP3 NPHP3-ACAD11

Gene Name:

nephronophthisis 3 (adolescent)

NPHP3-ACAD11 readthrough (NMD candidate)

Gene Aliases:

CFAP31, MKS7, NPH3, RHPD, RHPD1, SLSN3

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Chromosome Location:

Chr.3: 132680609 - 132722459 on Build GRCh38

Chromosome Location:

Chr.3: 132558138 - 132722459 on Build GRCh38

Species:

Human

Species Specific ID (Flybase ID):

-

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Assay Details

Gene Symbol: NPHP3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_153240.4	NP_694972.3	22 - 23	3311		144
GenBank mRNA	AK092910.1	-	11 - 12	1507		144
	AK094015.1	-	7 - 8	943		144
	AL832863.1	-	11 - 12	1462		144
	AL832877.1	-	19 - 20	5161		144
	AY257864.1	-	22 - 23	3240		144
	AY257865.1	-	9 - 10	1277		144
	BC131729.1	-	20 - 21	2781		144
	CR749498.1	-	18 - 19	3932		144

Gene Symbol: NPHP3-ACAD11
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_037804.1		21 - 22	3213		144
GenBank mRNA	AB082531.1	-	21 - 22	3213		144

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300014048.hg.1, TC0300014050.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03003342.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene NPHP3
Click here to find siRNAs for Gene NPHP3-ACAD11

Gene Ontology Categories:

Process(es)

kidney development
heart looping
atrial septum development
determination of left/right symmetry
Wnt signaling pathway
lung development
determination of pancreatic left/right asymmetry
photoreceptor cell maintenance
maintenance of organ identity
convergent extension involved in gastrulation
cilium morphogenesis
epithelial cilium movement involved in determination of left/right asymmetry
kidney morphogenesis
determination of intestine left/right asymmetry
determination of stomach left/right asymmetry
determination of liver left/right asymmetry
ureter development
negative regulation of canonical Wnt signaling pathway
regulation of Wnt signaling pathway, planar cell polarity pathway
regulation of planar cell polarity pathway involved in neural tube closure

Function(s)

protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR03032477.hg.1	TC03003342.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03032477.hg.1	ENST00000326682.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03032477.hg.1	ENST00000337331.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03032477.hg.1	NM_153240.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	ENST00000337331.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	ENST00000465756.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	ENST00000474871.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	ENST00000490993.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	NM_153240.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	ENST00000337331.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	ENST00000465756.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	ENST00000474871.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	ENST00000490993.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	NM_153240.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300208996.hg.1	TC0300014050.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300208918.hg.1	ENST00000471702.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0300208918.hg.1	NR_037804.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300208918.hg.1	ENST00000471702.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0300208918.hg.1	NR_037804.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300208918.hg.1	TC0300014048.hg.1	Clariom D TC