Hs01027014_m1 Best Coverage

• Gene Symbol: SPTLC2
• Gene Name: serine palmitoyltransferase long chain base subunit 2
• Gene Aliases: HSN1C, LCB2, LCB2A, NSAN1C, SPT2, hLCB2a
• Chromosome Location: Chr.14: 77505997 - 77616767 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SPTLC2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_004863.3	NP_004854.1	4 - 5	817		66
	XM_011537384.2	XP_011535686.1	4 - 5	713		66
GenBank mRNA	AB011098.1	-	4 - 5	817		66
	BC005123.2	-	4 - 5	718	3688136	66
	BQ338973.1	-	1 - 2	149		66
	U15555.1	-	3 - 4	453		66
	Y08686.1	-	4 - 5	677		66

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1400009787.hg.1
This assay targets the same location as HTA transcript cluster(s) TC14001348.hg.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Homo sapiens, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SPTLC2

Panther Classification:

Molecular Function -

transaminase

Gene Ontology Categories:

Process(es)

sphingomyelin biosynthetic process
sphingolipid biosynthetic process
sphinganine biosynthetic process
sphingosine biosynthetic process
ceramide biosynthetic process
positive regulation of lipophagy

Function(s)

serine C-palmitoyltransferase activity
pyridoxal phosphate binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR14015340.hg.1	ENST00000216484.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR14015340.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR14015340.hg.1	TC14001348.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554365.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554365.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554365.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554365.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554365.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000556264.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000556264.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000556264.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000556607.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000556607.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000556607.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000556607.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000556607.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000557566.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000557566.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000557566.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	ENST00000557566.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	PSR1400172285.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172285.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172285.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	PSR1400172285.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172285.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1400172285.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	PSR1400172285.hg.1	TC1400009787.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000216484.6	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554365.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554365.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554365.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554365.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554365.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000554901.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000556264.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000556264.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000556264.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000556607.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000556607.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000556607.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000556607.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000556607.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000557566.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000557566.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000557566.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	ENST00000557566.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq
Affymetrix Human Clariom D Assay	TC1400009787.hg.1	NM_004863.3	Refseq