Hs01041826_m1

• Gene Symbol: USP40
• Gene Name: ubiquitin specific peptidase 40
• Gene Aliases: -
• Chromosome Location: Chr.2: 233475519 - 233566789 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: USP40
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_018218.2	NP_060688.1	1 - 2	230		117
	XM_006712612.3	XP_006712675.1	1 - 2	245		117
	XM_011511396.2	XP_011509698.1	1 - 2	245		117
	XM_011511397.2	XP_011509699.1	2 - 3	319		117
	XM_011511398.2	XP_011509700.1	1 - 2	245		117
	XM_011511399.2	XP_011509701.1	2 - 3	319		117
	XM_011511401.2	XP_011509703.1	1 - 2	245		117
	XM_017004426.1	XP_016859915.1	2 - 3	319		117
	XM_017004428.1	XP_016859917.1	1 - 2	129		117
GenBank mRNA	AJ583821.2	-	1 - 2	230		117
	AK001647.1	-	1 - 2	192		117
	AK295112.1	-	2 - 3	312		117
	BC067300.1	-	2 - 3	292		117

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0200016093.hg.1
This assay targets the same location as HTA transcript cluster(s) TC02002882.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK001647.1,XM_017004428.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Protease, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene USP40

Panther Classification:

Molecular Function -

cysteine protease

Gene Ontology Categories:

Process(es)

ubiquitin-dependent protein catabolic process
protein deubiquitination

Function(s)

thiol-dependent ubiquitinyl hydrolase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR02046423.hg.1	TC02002882.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR02046423.hg.1	ENST00000251722.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02046423.hg.1	ENST00000427112.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02046423.hg.1	ENST00000435959.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02046423.hg.1	ENST00000443711.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02046423.hg.1	ENST00000450966.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02046423.hg.1	NM_018218.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR02046424.hg.1	TC02002882.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR02046424.hg.1	ENST00000251722.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02046424.hg.1	ENST00000427112.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02046424.hg.1	ENST00000435959.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02046424.hg.1	ENST00000443711.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02046424.hg.1	ENST00000450966.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02046424.hg.1	NM_018218.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000251722.10	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000427112.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000427947.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000443711.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000450966.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000484528.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	NM_018218.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000251722.10	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000427112.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000427947.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000443711.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000450966.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	ENST00000484528.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	NM_018218.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200218213.hg.1	TC0200016093.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000251722.10	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000427112.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000427947.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000443711.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000450966.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000484528.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	NM_018218.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000251722.10	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000427112.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000427947.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000443711.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000450966.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	ENST00000484528.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	NM_018218.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200218214.hg.1	TC0200016093.hg.1	Clariom D TC