Hs01059114_m1

• Gene Symbol: ABCA1
• Gene Name: ATP binding cassette subfamily A member 1
• Gene Aliases: ABC-1, ABC1, CERP, HDLDT1, TGD
• Chromosome Location: Chr.9: 104781002 - 104928246 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: ABCA1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_005502.3	NP_005493.2	27 - 28	4305		65
	XM_005251773.2	XP_005251830.1	27 - 28	4220		65
	XM_005251776.2	XP_005251833.1	26 - 27	4060		65
	XM_011518339.2	XP_011516641.1	28 - 29	4295		65
	XM_011518340.2	XP_011516642.1	29 - 30	4510		65
	XM_011518341.2	XP_011516643.1	28 - 29	4289		65
	XM_011518342.2	XP_011516644.1	25 - 26	3998		65
	XM_011518344.2	XP_011516646.1	28 - 29	4295		65
	XM_017014378.1	XP_016869867.1	28 - 29	4493		65
	XM_017014379.1	XP_016869868.1	28 - 29	4901		65
	XM_017014380.1	XP_016869869.1	28 - 29	4227		65
	XM_017014381.1	XP_016869870.1	28 - 29	4293		65
	XM_017014382.1	XP_016869871.1	26 - 27	4758		65
GenBank mRNA	AB055982.1	-	26 - 27	3901		65
	AB445477.1	-	26 - 27	3901		65
	AF165281.1	-	25 - 26	3841		65
	AF285167.1	-	27 - 28	4191		65
	AJ012376.1	-	25 - 26	3841		65
	BC146856.1	-	27 - 28	4115	9056784	65

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0900011072.hg.1
This assay targets the same location as HTA transcript cluster(s) TC09001434.hg.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Transporter, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene ABCA1

Panther Classification:

Molecular Function -

ATP-binding cassette (ABC) transporter, primary active transporter, transporter

Gene Ontology Categories:

Process(es)

peptide secretion
protein lipidation
phagocytosis, engulfment
lysosome organization
G-protein coupled receptor signaling pathway
response to nutrient
cholesterol metabolic process
negative regulation of macrophage derived foam cell differentiation
positive regulation of cholesterol efflux
negative regulation of cholesterol storage
endosomal transport
positive regulation of cAMP biosynthetic process
intracellular cholesterol transport
regulation of Cdc42 protein signal transduction
cholesterol efflux
phospholipid efflux
high-density lipoprotein particle assembly
response to laminar fluid shear stress
apolipoprotein A-I-mediated signaling pathway
lipoprotein metabolic process
response to drug
cholesterol homeostasis
reverse cholesterol transport
phospholipid translocation
interleukin-1 beta secretion
phospholipid homeostasis
response to low-density lipoprotein particle
platelet dense granule organization
cellular response to lipopolysaccharide
cellular response to retinoic acid
cellular response to cholesterol
anion transmembrane transport

Function(s)

receptor binding
protein binding
ATP binding
phospholipid binding
phospholipid transporter activity
anion transmembrane transporter activity
cholesterol binding
cholesterol transporter activity
syntaxin binding
small GTPase binding
apolipoprotein binding
apolipoprotein A-I binding
apolipoprotein A-I receptor activity
ATPase activity, coupled to transmembrane movement of substances
ATPase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR09017862.hg.1	TC09001434.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR09017862.hg.1	ENST00000374736.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR09017862.hg.1	NM_005502.3	Refseq
Affymetrix Human Clariom D Assay	PSR0900175459.hg.1	ENST00000374736.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0900175459.hg.1	NM_005502.3	Refseq
Affymetrix Human Clariom D Assay	PSR0900175459.hg.1	ENST00000374736.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0900175459.hg.1	NM_005502.3	Refseq
Affymetrix Human Clariom D Assay	PSR0900175459.hg.1	TC0900011072.hg.1	Clariom D TC