Hs01062255_m1

• Gene Symbol: SLC8A1
• Gene Name: solute carrier family 8 member A1
• Gene Aliases: NCX1
• Chromosome Location: Chr.2: 40112146 - 40512452 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SLC8A1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001252624.1	NP_001239553.1	4 - 5	1969		118
	NM_021097.2	NP_066920.1	5 - 6	1993		118
	XM_006712081.2	XP_006712144.1	6 - 7	2175		118
	XM_006712082.3	XP_006712145.1	7 - 8	2277		118
	XM_006712083.3	XP_006712146.1	6 - 7	2094		118
	XM_006712084.3	XP_006712147.1	7 - 8	2375		118
	XM_006712085.3	XP_006712148.1	6 - 7	2997		118
	XM_011533050.1	XP_011531352.1	4 - 5	1969		118
	XM_011533054.2	XP_011531356.1	6 - 7	2011		118
	XM_011533055.2	XP_011531357.1	6 - 7	2138		118
	XM_011533056.1	XP_011531358.1	6 - 7	2011		118
	XM_017004745.1	XP_016860234.1	6 - 7	2159		118
	XM_017004746.1	XP_016860235.1	6 - 7	2012		118
	XM_017004748.1	XP_016860237.1	6 - 7	2080		118
	XM_017004749.1	XP_016860238.1	7 - 8	2280		118
	XM_017004750.1	XP_016860239.1	8 - 9	2514		118
	XM_017004751.1	XP_016860240.1	8 - 9	2511		118
	XM_017004752.1	XP_016860241.1	7 - 8	2315		118
	XM_017004753.1	XP_016860242.1	6 - 7	2011		118
	XM_017004754.1	XP_016860243.1	5 - 6	2115		118
GenBank mRNA	BC098285.1	-	5 - 6	203		118
	M91368.1	-		2049		118
	M96368.1	-	5 - 6	2010		118

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0200012339.hg.1
This assay targets the same location as HTA transcript cluster(s) TC02001769.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Transporter, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SLC8A1

Panther Classification:

Molecular Function -

secondary carrier transporter

Gene Ontology Categories:

Process(es)

regulation of the force of heart contraction
regulation of heart rate
regulation of sodium ion transport
ion transport
cellular sodium ion homeostasis
muscle contraction
response to nutrient
response to glucose
regulation of cell communication by electrical coupling
positive regulation of fibroblast migration
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
regulation of cardiac muscle contraction by calcium ion signaling
vascular smooth muscle contraction
telencephalon development
positive regulation of bone mineralization
response to ATP
cellular response to reactive oxygen species
sodium ion transmembrane transport
response to immobilization stress
response to muscle stretch
response to drug
response to hydrogen peroxide
relaxation of smooth muscle
negative regulation of cytosolic calcium ion concentration
cardiac muscle cell development
calcium ion homeostasis
relaxation of cardiac muscle
cardiac muscle contraction
cytosolic calcium ion transport
calcium ion transport into cytosol
calcium ion import
calcium ion transmembrane transport
cellular response to caffeine
cellular response to cAMP
sodium ion export
cellular response to hypoxia
membrane depolarization during cardiac muscle cell action potential
cell communication by electrical coupling involved in cardiac conduction
sodium ion import
positive regulation of the force of heart contraction
calcium ion export
regulation of cardiac conduction

Function(s)

calcium:sodium antiporter activity
calcium ion binding
protein binding
calmodulin binding
cytoskeletal protein binding
ankyrin binding
ion channel binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	TC02001769.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	ENST00000332839.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	ENST00000378715.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	ENST00000403092.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	ENST00000405901.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	ENST00000408028.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	ENST00000535962.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	ENST00000542756.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	NM_001112800.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	NM_001112801.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	NM_001252624.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR02028553.hg.1	NM_021097.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	TC02001769.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	ENST00000402441.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	ENST00000405269.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	ENST00000406391.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	ENST00000406785.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	ENST00000408028.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	ENST00000535962.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	ENST00000542024.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	NM_001112801.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	NM_001112802.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR02028559.hg.1	NM_001252624.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000402441.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000405269.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000406391.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000406785.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000407929.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000408028.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	NM_001112801.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	NM_001112802.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	NM_001252624.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000402441.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000405269.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000406391.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000406785.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000407929.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	ENST00000408028.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	NM_001112801.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	NM_001112802.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	NM_001252624.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200190188.hg.1	TC0200012339.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	ENST00000332839.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	ENST00000403092.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	ENST00000405901.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	ENST00000408028.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	NM_001112800.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	NM_001112801.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	NM_001252624.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	NM_021097.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	ENST00000332839.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	ENST00000403092.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	ENST00000405901.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	ENST00000408028.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	NM_001112800.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	NM_001112801.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	NM_001252624.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	NM_021097.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200190184.hg.1	TC0200012339.hg.1	Clariom D TC