Hs01081577_m1

• Gene Symbol: HDAC9
• Gene Name: histone deacetylase 9
• Gene Aliases: HD7, HD7b, HD9, HDAC, HDAC7, HDAC7B, HDAC9B, HDAC9FL, HDRP, MITR
• Chromosome Location: Chr.7: 18086942 - 19003745 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: HDAC9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001204144.2	NP_001191073.1	5 - 6	752		91
	NM_001204145.2	NP_001191074.1	3 - 4	444		91
	NM_001204147.2	NP_001191076.1	2 - 3	410		91
	NM_001321868.1	NP_001308797.1	4 - 5	692		91
	NM_001321870.1	NP_001308799.1	4 - 5	692		91
	NM_001321871.1	NP_001308800.1	4 - 5	692		91
	NM_001321875.1	NP_001308804.1	3 - 4	613		91
	NM_001321878.1	NP_001308807.1	3 - 4	613		91
	NM_001321886.1	NP_001308815.1	4 - 5	672		91
	NM_001321888.1	NP_001308817.1	3 - 4	444		91
	NM_001321890.1	NP_001308819.1	3 - 4	613		91
	NM_001321891.1	NP_001308820.1	3 - 4	613		91
	NM_001321893.1	NP_001308822.1	4 - 5	510		91
	NM_001321900.1	NP_001308829.1	3 - 4	613		91
	NM_014707.3	NP_055522.1	3 - 4	444		91
	NM_058176.2	NP_478056.1	2 - 3	299		91
	NM_178423.2	NP_848510.1	3 - 4	444		91
	XM_011515636.2	XP_011513938.1	3 - 4	974		91
	XM_011515637.2	XP_011513939.1	3 - 4	398		91
	XM_011515646.2	XP_011513948.1	2 - 3	1970		91
	XM_011515651.1	XP_011513953.1	3 - 4	374		91
	XM_017012826.1	XP_016868315.1	3 - 4	974		91
	XM_017012830.1	XP_016868319.1	3 - 4	374		91
GenBank mRNA	AB018287.1	-	3 - 4	408		91
	AJ459808.1	-	3 - 4	408		91
	AK297404.1	-	3 - 4	398		91
	AK304298.1	-	5 - 6	745		91
	AK304410.1	-	2 - 3	373		91
	AY032737.1	-	2 - 3	258		91
	AY032738.1	-	2 - 3	258		91
	BC150328.1	-	3 - 4	419	8860495	91
	BC152405.1	-	3 - 4	408	8862508	91

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0700006813.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene HDAC9

Panther Classification:

Molecular Function -

histone modifying enzyme

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
response to amphetamine
transcription, DNA-templated
inflammatory response
heart development
chromatin modification
histone deacetylation
neuron differentiation
B cell differentiation
cellular response to insulin stimulus
peptidyl-lysine deacetylation
B cell activation
negative regulation of transcription, DNA-templated
regulation of skeletal muscle fiber development
regulation of striated muscle cell differentiation
histone H3 deacetylation
histone H4 deacetylation
positive regulation of cell migration involved in sprouting angiogenesis

Function(s)

transcription corepressor activity
histone deacetylase activity
protein kinase C binding
protein binding
transcription factor binding
NAD-dependent histone deacetylase activity (H3-K14 specific)
protein deacetylase activity
histone deacetylase binding
metal ion binding
repressing transcription factor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000401921.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000405010.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000406072.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000406451.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000413380.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000413509.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000417496.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000428307.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000432645.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000441542.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000441986.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000446646.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000456174.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000461159.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000523867.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000524023.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000622668.4	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_001204144.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_001204145.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_001204146.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_001204147.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_001204148.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_014707.3	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_058176.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_178423.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_178425.3	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000401921.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000405010.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000406072.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000406451.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000413380.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000413509.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000417496.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000428307.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000432645.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000441542.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000441986.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000446646.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000456174.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000461159.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000523867.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000524023.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	ENST00000622668.4	Ensembl
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_001204144.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_001204145.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_001204146.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_001204147.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_001204148.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_014707.3	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_058176.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_178423.2	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	NM_178425.3	Refseq
Affymetrix Human Clariom D Assay	PSR0700147083.hg.1	TC0700006813.hg.1	Clariom D TC