Hs01088910_m1

• Gene Symbol: CNOT1
• Gene Name: CCR4-NOT transcription complex subunit 1
• Gene Aliases: AD-005, CDC39, NOT1, NOT1H
• Chromosome Location: Chr.16: 58519946 - 58629886 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CNOT1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001265612.1	NP_001252541.1	33 - 34	5000		86
	NM_016284.4	NP_057368.3	33 - 34	5015		86
	NR_049763.1		33 - 34	5000		86
GenBank mRNA	AB023224.2	-	20 - 21	3060		86
	AK075125.1	-	3 - 4	314		86
	AK302495.1	-	10 - 11	1385		86
	AL117492.1	-	5 - 6	854		86
	AL832769.1	-	33 - 34	4964		86
	AL833549.1	-	33 - 34	4974		86
	BC024317.1	-	16 - 17	2414		86
	BX537840.1	-	33 - 34	4946		86
	CR749237.1	-	26 - 27	3955		86
	EF553522.1	-	33 - 34	4949		86

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1600010490.hg.1
This assay targets the same location as HTA transcript cluster(s) TC16001154.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CNOT1

Panther Classification:

Molecular Function -

mRNA polyadenylation factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
nuclear-transcribed mRNA poly(A) tail shortening
transcription, DNA-templated
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
multicellular organism development
positive regulation of cytoplasmic mRNA processing body assembly
negative regulation of translation
negative regulation of intracellular estrogen receptor signaling pathway
gene silencing by miRNA
negative regulation of retinoic acid receptor signaling pathway
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
positive regulation of mRNA catabolic process
RNA phosphodiester bond hydrolysis, exonucleolytic
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
regulation of stem cell population maintenance

Function(s)

poly(A)-specific ribonuclease activity
protein binding
protein domain specific binding
estrogen receptor binding
protein complex scaffold
retinoic acid receptor binding
poly(A) RNA binding
armadillo repeat domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR16016058.hg.1	ENST00000245138.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16016058.hg.1	ENST00000317147.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16016058.hg.1	ENST00000394200.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16016058.hg.1	NM_016284.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16016058.hg.1	TC16001154.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	ENST00000317147.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	ENST00000567188.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	ENST00000569240.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	NM_001265612.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	NM_016284.4	Refseq
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	NR_049763.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	ENST00000317147.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	ENST00000567188.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	ENST00000569240.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	NM_001265612.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	NM_016284.4	Refseq
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	NR_049763.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600180648.hg.1	TC1600010490.hg.1	Clariom D TC