Hs01106214_m1 Best Coverage

• Gene Symbol: PTPN13
• Gene Name: protein tyrosine phosphatase, non-receptor type 13
• Gene Aliases: FAP-1, PNP1, PTP-BAS, PTP-BL, PTP1E, PTPL1, PTPLE, hPTP1E
• Chromosome Location: Chr.4: 86594307 - 86815179 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: PTPN13
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_006264.2	NP_006255.1	29 - 30	5221		65
	NM_080683.2	NP_542414.1	30 - 31	5278		65
	NM_080684.2	NP_542415.1	27 - 28	4705		65
	NM_080685.2	NP_542416.1	30 - 31	5293		65
	XM_011532165.1	XP_011530467.1	30 - 31	5301		65
	XM_017008511.1	XP_016864000.1	30 - 31	5286		65
	XM_017008512.1	XP_016864001.1	29 - 30	5244		65
	XM_017008513.1	XP_016864002.1	29 - 30	5229		65
	XM_017008514.1	XP_016864003.1	29 - 30	5244		65
	XM_017008515.1	XP_016864004.1	29 - 30	4740		65
	XM_017008516.1	XP_016864005.1	27 - 28	4728		65
GenBank mRNA	AB208904.1	-	28 - 29	4645		65
	AF233323.1	-	7 - 8	832		65
	BC039610.1	-	7 - 8	832		65
	BC140777.1	-	28 - 29	4760	9021645	65
	D21209.1	-	30 - 31	4861		65
	D21210.1	-	29 - 30	4804		65
	D21211.1	-	27 - 28	4288		65
	L34583.1	-	7 - 8	979		65
	U12128.1	-	29 - 30	5030		65
	X79676.1	-	7 - 8	1151		65
	X80289.1	-	29 - 30	4818		65

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0400008041.hg.1
This assay targets the same location as HTA transcript cluster(s) TC04000469.hg.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Protein Phosphatase, Mammalian Gene Collection, Recommended Assay, Homo sapiens, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene PTPN13

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Process(es)

protein dephosphorylation
regulation of phosphatidylinositol 3-kinase signaling
peptidyl-tyrosine dephosphorylation

Function(s)

protein tyrosine phosphatase activity
protein binding
phosphatidylinositol 3-kinase regulatory subunit binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	TC04000469.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	ENST00000316707.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	ENST00000357349.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	ENST00000411767.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	ENST00000427191.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	ENST00000436978.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	ENST00000511467.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	NM_006264.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	NM_080683.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	NM_080684.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR04006753.hg.1	NM_080685.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	ENST00000316707.10	Ensembl
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	ENST00000411767.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	ENST00000427191.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	ENST00000436978.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	ENST00000511467.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	NM_006264.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	NM_080683.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	NM_080684.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	NM_080685.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	ENST00000316707.10	Ensembl
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	ENST00000411767.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	ENST00000427191.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	ENST00000436978.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	ENST00000511467.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	NM_006264.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	NM_080683.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	NM_080684.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	NM_080685.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400155353.hg.1	TC0400008041.hg.1	Clariom D TC

Array Name	Probe IDs	Targets	Target Type
ABI Human Genome Survey Microarray Version 2.0	188871	-	-