Hs01122278_m1

• Gene Symbol: NIPBL
• Gene Name: NIPBL, cohesin loading factor
• Gene Aliases: CDLS, CDLS1, IDN3, IDN3-B, Scc2
• Chromosome Location: Chr.5: 36876759 - 37065819 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: NIPBL
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_015384.4	NP_056199.2	44 - 45	8178		116
	NM_133433.3	NP_597677.2	44 - 45	8178		116
	XM_005248280.3	XP_005248337.1	44 - 45	8167		116
	XM_005248282.4	XP_005248339.3	38 - 39	7669		116
	XM_006714467.2	XP_006714530.1	43 - 44	8020		116
	XM_006714468.2	XP_006714531.1	43 - 44	7969		116
	XM_017009329.1	XP_016864818.1	43 - 44	8020		116
	XM_017009330.1	XP_016864819.1	36 - 37	10441		116
	XM_017009331.1	XP_016864820.1	43 - 44	6541		116
GenBank mRNA	AJ627032.1	-	44 - 45	8147		116
	AJ640137.1	-	44 - 45	8147		116
	AK002065.1	-	8 - 9	1296		116
	AK022659.1	-	10 - 11	1490		116
	AK023416.1	-	12 - 13	1826		116
	AL137726.1	-	3 - 4	443		116
	BC033847.1	-	3 - 4	460		116

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500007163.hg.1
This assay targets the same location as HTA transcript cluster(s) TC05000166.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene NIPBL

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
metanephros development
heart morphogenesis
outflow tract morphogenesis
cellular response to DNA damage stimulus
mitotic sister chromatid cohesion
brain development
sensory perception of sound
stem cell population maintenance
positive regulation of histone deacetylation
maintenance of mitotic sister chromatid cohesion
cellular protein localization
embryonic forelimb morphogenesis
forelimb morphogenesis
external genitalia morphogenesis
positive regulation of multicellular organism growth
ear morphogenesis
regulation of hair cycle
fat cell differentiation
positive regulation of ossification
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
regulation of embryonic development
embryonic digestive tract morphogenesis
developmental growth
eye morphogenesis
regulation of developmental growth
embryonic viscerocranium morphogenesis
cognition
face morphogenesis
gall bladder development
uterus morphogenesis
cellular response to X-ray

Function(s)

chromatin binding
protein binding
protein C-terminus binding
mediator complex binding
histone deacetylase binding
protein N-terminus binding
chromo shadow domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR05001950.hg.1	TC05000166.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR05001950.hg.1	ENST00000282516.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05001950.hg.1	ENST00000448238.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05001950.hg.1	NM_015384.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR05001950.hg.1	NM_133433.3	Refseq
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	ENST00000282516.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	ENST00000448238.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	ENST00000514335.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	NM_015384.4	Refseq
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	NM_133433.3	Refseq
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	ENST00000282516.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	ENST00000448238.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	ENST00000514335.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	NM_015384.4	Refseq
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	NM_133433.3	Refseq
Affymetrix Human Clariom D Assay	PSR0500148514.hg.1	TC0500007163.hg.1	Clariom D TC