Hs01124528_m1

• Gene Symbol: PTPRM
• Gene Name: protein tyrosine phosphatase, receptor type M
• Gene Aliases: PTPRL1, R-PTP-MU, RPTPM, RPTPU, hR-PTPu
• Chromosome Location: Chr.18: 7567316 - 8406861 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: PTPRM
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001105244.1	NP_001098714.1	13 - 14	2664		92
	NM_002845.3	NP_002836.3	13 - 14	2664		92
	XM_011525712.2	XP_011524014.1	13 - 14	2659		92
	XM_011525716.2	XP_011524018.1	9 - 10	1618		92
	XM_011525722.2	XP_011524024.1	9 - 10	1624		92
	XM_017025899.1	XP_016881388.1	13 - 14	2203		92
	XM_017025901.1	XP_016881390.1	13 - 14	2203		92
	XM_017025902.1	XP_016881391.1	13 - 14	2203		92
	XM_017025903.1	XP_016881392.1	13 - 14	2203		92
	XM_017025904.1	XP_016881393.1	13 - 14	2203		92
	XM_017025907.1	XP_016881396.1	9 - 10	1624		92
	XM_017025909.1	XP_016881398.1	9 - 10	1624		92
GenBank mRNA	AK294492.1	-	9 - 10	1545		92
	AK303652.1	-	13 - 14	2162		92
	BC051651.1	-	13 - 14	2400	5274244	92
	BC151842.1	-	13 - 14	3210	8860327	92
	X58288.1	-	13 - 14	2161		92

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1800006589.hg.1
This assay targets the same location as HTA transcript cluster(s) TC18000035.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene PTPRM

Panther Classification:

Molecular Function -

extracellular matrix glycoprotein

Gene Ontology Categories:

Process(es)

negative regulation of endothelial cell proliferation
protein dephosphorylation
homophilic cell adhesion via plasma membrane adhesion molecules
signal transduction
negative regulation of endothelial cell migration
retina layer formation
negative regulation of angiogenesis
neuron projection development
retinal ganglion cell axon guidance
peptidyl-tyrosine dephosphorylation
response to drug
positive regulation of vasodilation

Function(s)

protein tyrosine phosphatase activity
transmembrane receptor protein tyrosine phosphatase activity
protein binding
identical protein binding
cadherin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR18000333.hg.1	ENST00000332175.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR18000333.hg.1	ENST00000400053.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR18000333.hg.1	ENST00000400060.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR18000333.hg.1	ENST00000444013.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR18000333.hg.1	NM_001105244.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR18000333.hg.1	NM_002845.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR18000333.hg.1	TC18000035.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000332175.12	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000400053.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000400060.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000577468.2	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000577827.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000580170.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000583289.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	NM_001105244.1	Refseq
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	NM_002845.3	Refseq
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000332175.12	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000400053.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000400060.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000577468.2	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000577827.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000580170.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	ENST00000583289.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	NM_001105244.1	Refseq
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	NM_002845.3	Refseq
Affymetrix Human Clariom D Assay	PSR1800145096.hg.1	TC1800006589.hg.1	Clariom D TC