Hs01561646_m1

• Gene Symbol: SAFB
• Gene Name: scaffold attachment factor B
• Gene Aliases: HAP, HET, SAB-B1, SAF-B, SAF-B1, SAFB1
• Chromosome Location: Chr.19: 5623035 - 5668478 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SAFB
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001201338.1	NP_001188267.1	17 - 18	2505		125
	NM_001201339.1	NP_001188268.1	17 - 18	2502		125
	NM_001201340.1	NP_001188269.1	16 - 17	2298		125
	NM_001320571.1	NP_001307500.1	15 - 16	2230		125
	NM_001320572.1	NP_001307501.1	17 - 18	2502		125
	NM_002967.3	NP_002958.2	17 - 18	2505		125
	XM_017027114.1	XP_016882603.1	15 - 16	2187		125
	XM_017027115.1	XP_016882604.1	15 - 16	2187		125
	XM_017027116.1	XP_016882605.1	16 - 17	1895		125
	XM_017027117.1	XP_016882606.1	16 - 17	1892		125
	XM_017027118.1	XP_016882607.1	16 - 17	1892		125
GenBank mRNA	AK095736.1	-	13 - 14	1681		125
	AK290444.1	-	17 - 18	2398		125
	AK293152.1	-	14 - 15	2003		125
	AK294671.1	-	15 - 16	1955		125
	AK295298.1	-	14 - 15	2088		125
	AK298707.1	-	16 - 17	2194		125
	AK299525.1	-	17 - 18	2263		125
	AK304474.1	-	13 - 14	1653		125
	BC126219.1	-	17 - 18	2376	8991935	125
	BC143937.1	-	17 - 18	2373	9052455	125
	BC143938.1	-	17 - 18	2373	9052456	125
	BC143939.1	-	17 - 18	2373	9052457	125
	L43631.1	-	17 - 18	2182		125
	U72355.1	-	17 - 18	2387		125

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1900006764.hg.1
This assay targets the same location as HTA transcript cluster(s) TC19000102.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SAFB

Gene Ontology Categories:

Process(es)

chromatin organization
transcription, DNA-templated
intracellular estrogen receptor signaling pathway
growth
hormone metabolic process
positive regulation of transcription from RNA polymerase II promoter
regulation of mRNA processing

Function(s)

nucleotide binding
core promoter binding
chromatin binding
double-stranded DNA binding
protein binding
protein kinase binding
sequence-specific DNA binding
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR19001590.hg.1	ENST00000292123.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR19001590.hg.1	ENST00000433404.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR19001590.hg.1	ENST00000454510.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR19001590.hg.1	ENST00000538656.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR19001590.hg.1	ENST00000540206.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR19001590.hg.1	NM_001201338.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR19001590.hg.1	NM_001201339.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR19001590.hg.1	NM_001201340.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR19001590.hg.1	NM_002967.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR19001590.hg.1	TC19000102.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC1100009328.hg.1	ENST00000531724.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000292123.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000454510.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000588852.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000589863.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000591991.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000592224.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000592555.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	NM_001201338.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	NM_001201339.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	NM_001201340.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	NM_002967.3	Refseq
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	TC1900006764.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000292123.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000454510.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000588852.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000589863.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000591991.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000592224.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	ENST00000592555.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	NM_001201338.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	NM_001201339.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	NM_001201340.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900147426.hg.1	NM_002967.3	Refseq
Affymetrix Human Clariom D Assay	TC1100009328.hg.1	ENST00000531724.1	Ensembl