Name: [Hs01571231_s1] [PCDHB18P]
Creator: Thermo Fisher Scientific
Keywords: [PCDHB18P] Assay, [protocadherin beta 18 pseudogene] Assay

Assay Details

Gene Symbol: PCDHB18P
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_001281.2		1	2869		130
GenBank mRNA	AF217743.1	-	1	2488		130
GenBank mRNA	AK095496.1	-	1	2838		130

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	DB314968.1	-	1		Chr. 5 - 141237013 - 141237529 [-] on Build GRCh38	130
GenBankmRNA	DB310039.1	-	1		Chr. 5 - 141236995 - 141237522 [-] on Build GRCh38	130
GenBankmRNA	BE326289.1	-	1	180	Chr. 5 - 141237022 - 141237440 [+] on Build GRCh38	130

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	protocadherin beta 14	PCDHB14	PCDH-BETA14	-8.4kb	Sense	Chr. 5 - 141222326 - 141226288 on NCBI Build GRCh38
Downstream	protocadherin beta 19 pseudogene	PCDHB19P	PCDH-PSI5, PCDHB19	2.8kb	Sense	Chr. 5 - 141240121 - 141244752 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500008886.hg.1

Set Membership:

Amplicon length greater than or equal to 101

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161847.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161847.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161847.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161847.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161847.hg.1	TC0500008886.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq

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Catalog #	4426961
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System Message

Genomic Map