Hs01687308_s1

• Gene Symbol: CLK2P1
• Gene Name: CDC like kinase 2, pseudogene 1
• Gene Aliases: CLK2P
• Chromosome Location: Chr.7: 23584716 - 23586527 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CLK2P1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_002711.3		1	349		164
GenBank mRNA	BC022025.1	-	1	365		164

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	DB054291.1	-	1	368		Chr. 7 - 23586052 - 23586546 [-] on Build GRCh38	164
GenBankmRNA	DB036023.1	-	1	336		Chr. 7 - 23585949 - 23586514 [-] on Build GRCh38	164
GenBankmRNA	DB038453.1	-	1	357		Chr. 7 - 23585969 - 23586534 [-] on Build GRCh38	164
GenBankmRNA	DB057698.1	-	1	356		Chr. 7 - 23586002 - 23586534 [-] on Build GRCh38	164
GenBankmRNA	DB471104.1	-	1	345		Chr. 7 - 23586050 - 23586524 [-] on Build GRCh38	163
GenBankmRNA	DB446583.1	-	1	346		Chr. 7 - 23586097 - 23586524 [-] on Build GRCh38	164
GenBankmRNA	HY007936.1	-	1	349		Chr. 7 - 23585933 - 23586527 [-] on Build GRCh38	164
GenBankmRNA	DB460497.1	-	1	360		Chr. 7 - 23586051 - 23586538 [-] on Build GRCh38	164
GenBankmRNA	HY049493.1	-	1	361		Chr. 7 - 23586111 - 23586538 [-] on Build GRCh38	164
GenBankmRNA	DB032385.1	-	1	374		Chr. 7 - 23585968 - 23586552 [-] on Build GRCh38	164
GenBankmRNA	DB023440.1	-	1	392		Chr. 7 - 23586020 - 23586570 [-] on Build GRCh38	164
GenBankmRNA	HY031637.1	-	1	375		Chr. 7 - 23586094 - 23586551 [-] on Build GRCh38	164
GenBankmRNA	DB022984.1	-	1	361		Chr. 7 - 23586052 - 23586538 [-] on Build GRCh38	164
GenBankmRNA	BM563567.1	-		338		Chr. - - [-] on Build	164
GenBankmRNA	DB443950.1	-	1	360		Chr. 7 - 23586087 - 23586538 [-] on Build GRCh38	164
GenBankmRNA	DB056472.1	-	1			Chr. 7 - 23586052 - 23586538 [-] on Build GRCh38	164
GenBankmRNA	HY021239.1	-	1	343		Chr. 7 - 23586048 - 23586520 [-] on Build GRCh38	164
GenBankmRNA	BG723070.1	-	1	335		Chr. 7 - 23585964 - 23586511 [-] on Build GRCh38	164
GenBankmRNA	BG717579.1	-		365		Chr. - - [-] on Build	164
GenBankmRNA	BG720946.1	-	1	364		Chr. 7 - 23585791 - 23586538 [-] on Build GRCh38	164
GenBankmRNA	DB056280.1	-	1	360		Chr. 7 - 23586052 - 23586538 [-] on Build GRCh38	164
GenBankmRNA	HY032935.1	-	1	332		Chr. 7 - 23586045 - 23586509 [-] on Build GRCh38	164
GenBankmRNA	HY015400.1	-	1	250		Chr. 7 - 23585892 - 23586428 [-] on Build GRCh38	164
GenBankmRNA	DB043867.1	-	1	361		Chr. 7 - 23585963 - 23586538 [-] on Build GRCh38	164
GenBankmRNA	HY031139.1	-	1	343		Chr. 7 - 23586058 - 23586520 [-] on Build GRCh38	164
GenBankmRNA	HY005607.1	-	1	343		Chr. 7 - 23586020 - 23586520 [-] on Build GRCh38	164
GenBankmRNA	HY220942.1	-	1	297		Chr. 7 - 23586011 - 23586442 [-] on Build GRCh38	164
GenBankmRNA	DB458507.1	-	1	360		Chr. 7 - 23586061 - 23586538 [-] on Build GRCh38	164
GenBankmRNA	DB032346.1	-	1	353		Chr. 7 - 23586026 - 23586531 [-] on Build GRCh38	164
GenBankmRNA	DB025100.1	-	1	360		Chr. 7 - 23585991 - 23586538 [-] on Build GRCh38	164

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	transformer 2 alpha homolog	TRA2A	AWMS1, HSU53209	-54.0kb	Sense	Chr. 7 - 23504780 - 23532041 on NCBI Build GRCh38
Downstream	coiled-coil domain containing 126	CCDC126		10.8kb	Anti-sense	Chr. 7 - 23597333 - 23644708 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0700010475.hg.1
This assay targets the same location as HTA transcript cluster(s) TC07001198.hg.1

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578160	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578145	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578163	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05361132	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578144	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P15917701	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578139	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05361118	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P15917702	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05361133	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05361125	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578161	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578142	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05361116	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578157	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578150	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05361130	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578133	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05361131	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578137	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P25578143	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	208293	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_24_P67027	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578152	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361134	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578161	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578181	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578177	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361128	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578160	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578178	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361121	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578176	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578157	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361133	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361135	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578179	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361143	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361131	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361141	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578163	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361125	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578177	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578178	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578163	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361121	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578160	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578181	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578179	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361128	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578161	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361134	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361131	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361125	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361143	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578152	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578157	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25578176	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361141	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361135	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05361133	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P37956978	-	-
Agilent Human 1B Microarray G4111A	A_32_P229545	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361131	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361135	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361105	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361128	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361107	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361141	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15917701	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361111	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361110	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361144	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361120	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361133	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361118	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361142	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361125	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361136	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361129	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361123	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15917714	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361116	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361139	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05361113	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Gene 1.0 ST Array	NR_002711_at	-	-
Affymetrix Human Gene 1.0 ST Array	8138597	-	-
Affymetrix Human Gene 1.1 ST Array	8138596	-	-
Affymetrix Human Transcriptome Array 2.0	PSR07018772.hg.1	TC07001198.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR07018772.hg.1	NR_002711.3	Refseq
Affymetrix Human Clariom D Assay	PSR0700174556.hg.1	ENST00000416636.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0700174556.hg.1	NR_002711.3	Refseq
Affymetrix Human Clariom D Assay	PSR0700174556.hg.1	ENST00000416636.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0700174556.hg.1	NR_002711.3	Refseq
Affymetrix Human Clariom D Assay	PSR0700174556.hg.1	TC0700010475.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0700174557.hg.1	NR_002711.3	Refseq
Affymetrix Human Clariom D Assay	PSR0700174557.hg.1	NR_002711.3	Refseq
Affymetrix Human Clariom D Assay	PSR0700174557.hg.1	TC0700010475.hg.1	Clariom D TC

Array Name	Probe IDs	Targets	Target Type
Arraystar Human LncRNA microarray V2.0	ASHG19A3A032551	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A032552	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A032552	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A032551	-	-

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_2063106	BC022025.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_2063106	NR_002711.3	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_1676061	BC022025.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_1676061	NR_002711.3	human_transcriptome
Illumina HumanWG-6 v2.0 expression beadchip	ILMN_1754532	-	-
HumanHT-12 V4.0 expression beadchip	ILMN_2063106	BC022025.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2063106	NR_002711.3	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_1676061	BC022025.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_1676061	NR_002711.3	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_1676061	BC022025.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_1676061	NR_002711.3	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2063106	BC022025.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2063106	NR_002711.3	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_1676061	BC022025.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_1676061	NR_002711.3	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2063106	BC022025.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2063106	NR_002711.3	human_transcriptome
Illumina human-6 v2.0 expression beadchip	ILMN_1676061	BC022025.1	human_transcriptome
Illumina human-6 v2.0 expression beadchip	ILMN_1676061	NR_002711.3	human_transcriptome
Illumina HumanRef-8 v3.0 expression beadchip	ILMN_2063106	BC022025.1	human_transcriptome
Illumina HumanRef-8 v3.0 expression beadchip	ILMN_2063106	NR_002711.3	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2063106	BC022025.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2063106	NR_002711.3	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_1754532	-	-
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2063106	BC022025.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2063106	NR_002711.3	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_1676061	BC022025.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_1676061	NR_002711.3	human_transcriptome
Illumina HumanWG-6_V2_0_R2	ILMN_1676061	BC022025.1	human_transcriptome
Illumina HumanWG-6_V2_0_R2	ILMN_1676061	NR_002711.3	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_1676061	BC022025.1	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_1676061	NR_002711.3	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_2063106	BC022025.1	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_2063106	NR_002711.3	human_transcriptome